BAC Information

Click to search

BAC

Clone NameMSMg01-359P07
Chromosome4 (Build37)
Map Location 107,565,620 - 107,566,094
singlet/doubletsinglet
Overlap gene0610037L13Rik
Upstream geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh
Downstream geneCpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359P07.T7 (MSMg01no359_p07.b1)MSMg01-359P07.TJ (MSMg01no359_p07.g1)
ACCAG469247AG469248
length734737
length of high quality
(start - end)		493 (33 - 525)438 (63 - 500)
definitionCHROMAT_FILE: MSMg01no359_p07.b1 PHD_FILE: MSMg01no359_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:34 2005CHROMAT_FILE: MSMg01no359_p07.g1 PHD_FILE: MSMg01no359_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTATTTCA
CGTCTCTGTAAGAAGCAAAGTTCGCTTGCTTCATCCCCACCCCAGAGAGC
CTTAAAGCTACATACCTGGGGCTGGAAGTCAACTGGTTCAAGGCCCCGGC
ACTCAAACTCCACTATCGTCTTGAACTTCTCATTGTCTTCAGCCTGGAAA
GGAAGTGTATTGAGGAGGCAGGACCAATGGAGACCACCTCCTCCAATGCC
CTCTGCCCTTTCTACCTTGTGGGCCCTAACTACACCAATGAGCCTAGAAC
AGGACCCAGAACAAGTTAGCCCTTTATAAAAACAAAACGCCTGTCTTGGG
TACTGCTCCAGAGAGGACCTCTGTAGACACAGGTTGTGCAGAAGAGTGAG
GATCTTTGGTCAACCTTCCTGCATGTCAGCAGAGCAGAGGACACCCGGCC
TGCTTACTGTAAGGATCTGAATCATGCACTGAGAGCCAAGCACTGGCCCT
AACACTGTGGTCAATGAATGGTAAGCGACCAACAAGACAAGAATGCTAAG
TTACCAGGGCTCTTAGACATCCACATGTTATTATTAAGCACACCATGGCC
TTTGTATAAACAGCCACCATGTTTGGGCTGAAAAGATGCTTCACAGGTTC
AACTCCCATTGGTGGTTATAAAAGTTAATCTTCTACCTTTCTATCAAGGA
ACTCGGTCCCCTTTTTCCGCCCCCATTTTTATTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTCCTTCCTTCCTGCCTACTGAGGTGTTCTGTGAACCC
CTGGTCAGGGTTGGGAGGAAACACACCCAGCAAACAGAGTTCTCGATTAT
CTGTGCCAAGGACCAGCCTTGGCTAGGTCAGGGATTTGGGAGCTGCAAGC
ATGGGTTACAAGCTGGCAGCCTGTGTTCTGCTCGAGATGGCTCCCTAGAC
AGCTCCCTGCAGTCTGCTCGAGGCAGCTTTTCAGACGGATTTCTCTTTGT
GTCCTGCTCTGCTCTAGACAACATTTTCTTGCTATTCTAAAAAGCTTCCT
GCTCGAGACAGCTAGCTTTCTGCTCGAGACAGCTCTCTCTGGTTGAGACA
ACTCTCTCAGCTAGTAAAAACTTCTAAAAGCTCTCTGGATAGCTCATGAG
TTTTCTGACCAAAGTCAAAAAAGCTCCTATTTAATAAAAAAAAAAAAATC
TTGGATCTTCCAACCAAGTCAGAAATCCTATTTTTAAAAATTTCTAAAAG
TAATTCTTGCGTTTTTGATCACAATCTGAAAACCTGAATATTCTACCCGA
AGTGTGGTCGCTCCCCAAGCTAATCTTTGGGATCCCCATCAATGTCTTAA
TACCCCATTCATGTACATAATTTTGACAAAAAACTGCCGTTTATTTTGCC
GTTAGGGCTTCTCTAGGCGAATCCAAATCTCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_p07.b1 MSMg01no359_p07.b1 CHROMAT_FILE:
MSMg01no359_p07.b1 PHD_FILE: MSMg01no359_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:34 2005
         (493 letters)



>mm_chr4_107565432_107566323
          Length = 892

 Score =  845 bits (437), Expect = 0.0
 Identities = 470/489 (96%), Gaps = 14/489 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatttcacgtctctgtaagaagcaaagttcgcttgcttcatccccaccccaga 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gaattcctatttca-gtctctgtaagaagcaaagttcgcttgcttcatccccaccccaga 605

                                                                       
Query: 65  gagccttaaagctacatacctggggctggaagtcaactggttcaaggccccggcactcaa 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gagccttaaagccacatacctggggctggaagtcaactggttcaaggccccggcactcaa 545

                                                                       
Query: 125 actccactatcgtcttgaacttctcattgtcttcagcctggaaaggaagtgtattgagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 actccactatcgtcttgaacttctcattgtcttcagcctggaaaggaagtgtattgagga 485

                                                                       
Query: 185 ggcaggaccaatggagaccacctcctccaatgccctctgccctttctaccttgtgggccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggcaggaccaatggagaccacctcctccaatgccctctgccctttctaccttgtgggccc 425

                                                                       
Query: 245 taactacaccaatgagcctagaacaggacccagaacaagttagccctttataaaaacaaa 304
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taactacaccactgagcctagaacaggacccagaacaagttagccctttataaaaacaaa 365

                                                                       
Query: 305 acgcctgtcttgggtactgctccagagaggacctctgtagacacaggttgtgcagaagag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acgcctgtcttgggtactgctccagagaggacctctgtagacacaggttgtgcagaagag 305

                                                                       
Query: 365 tgaggatctttggtcaaccttcctgcatgtcagcagagcagaggacacccggcctgctta 424
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 304 tgaggatccttggtcaaccttcctgcatgtcagcagagcagaggaaacccggcctactta 245

                                                                       
Query: 425 ctgtaaggatctgaatcatgcactgagagccaagcactggccctaacactgtggtcaatg 484
           |||||||||||||||||||||||||||||||||||||||             ||||||||
Sbjct: 244 ctgtaaggatctgaatcatgcactgagagccaagcactg-------------ggtcaatg 198

                    
Query: 485 aatggtaag 493
           |||||||||
Sbjct: 197 aatggtaag 189


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space:   426006
Effective search space used:   426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |