BAC Information

Click to search

BAC

Clone NameMSMg01-360B12
Chromosome4 (Build37)
Map Location 30,265,939 - 30,385,304
singlet/doubletdoublet
Overlap geneLOC665185
Upstream genenone
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360B12.T7 (MSMg01no360_b12.b1)MSMg01-360B12.TJ (MSMg01no360_b12.g1)
ACCAG469352AG469353
length746762
length of high quality
(start - end)
532 (45 - 576)456 (77 - 532)
definitionCHROMAT_FILE: MSMg01no360_b12.b1 PHD_FILE: MSMg01no360_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:45 2005CHROMAT_FILE: MSMg01no360_b12.g1 PHD_FILE: MSMg01no360_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,265,939 - 30,266,467)(30,384,849 - 30,385,304)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGGAATTATGCCTACTTAGCACAAGACCTAGTTTAGAGTATGAA
CCTGGATACCCTGAGATTTTATTATCTTAAGTTTAATTACTTTTGTGCCA
GGAAAAAGGTTTATGTCTTAGTTTTACTAGCTAAAAAGATTAAGGAACAT
CATATCTCTTCTACCTCTAAATTATGTCACCTGTGTAAAATTTGTGTAAT
TCTGGTTAGATGACAAGACTATTCAAACTAAACACACTGATGTGATTTCA
ATAAGAATAGACCCAATAGACACCAGTTGCACAGCTCTCTGCAAACACCA
TGGAGAAAATAGTATCAATCTTGGATGCAAGAAGGATATTGGGTTGAACA
CAACTCAGTAGCAAGTCCTGGTTCAAACTTCAAAGGGCTGACACTGTGTA
GTTTATTTGAGGAATATCTATACACAACATAATTTAAAAACTGTTTTTTG
GTGATACTTCAATACTGTGAATATAACAAGGATTAAACTATTACTGAATG
AAAATGAGGACTTGACAGCTCCAGAGTATGATTAAGGAGAAGGATTTTAT
TTCACACAAGAGCGAGAGTTCAGCCAGAGGAATCGGGAAGGGTTCAGACT
GACCTGGACTATGAAAGGAGAGAGAGGAAAGAATGAAGAAGGAAGAAGGA
AGGAATGACAGAAGGTAAGGATGTAAGAACGAAGCATGTACGAACG
NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAACAAGAATATTTCCTACTCTTG
CTCCCCACCAAATTTGCCCCAGGGAACACTCTTAAAATCAGGTTGATTAA
CCAAGAGGAATATTTTTGTTGTAGTATGTCATGGATATTTGAAGGGCCAT
GTGTTACTGATGACTCACTCAGAAGATGGGAGGCACTCTCAATATTTGCT
GAAATATTTTCAATACTATAAAATCCTTCAGGCTAATATCAGATAAGCAT
GGAAACCATTTCTGTGATGTTCTTATGAAAACTGAACTGTTTTCTCCTTC
CTTGTCCTTATTTTTATGCATCGTTATCTTTAAGTGTCCTGTGTTCAAAA
GGAAAATAAAAGTAGATCCATGCTTTGGATGATAGACTAAAAGTCATCTA
AAATTTAGATTCGCAAAAGAATTGGAAAAAGATGTTCATCACTCTAACCT
TTTCCAATTTATCTGACTTATATTTATAAAATGTATATGGAAAACAGATC
ACTTTTTAAAGATTACTGCAATTCTCTAGTACTCCTTCCTTTGAAAAAAA
GCATATCACACTTTATATTAGCCCAATAATATATGTCTTGTTCCTTGCAT
GGTTAAAAATTAATTTCTATAAATTTTCCCCCCATATACTGGTTATTTAT
ACCCCTACCCCCTAGTTCCCTCTCTTAAAGCCAATTCTTCTTCTTTTTTA
CAAACTATTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_b12.b1 MSMg01no360_b12.b1 CHROMAT_FILE:
MSMg01no360_b12.b1 PHD_FILE: MSMg01no360_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:45 2005
         (532 letters)



>mm_chr4_30265734_30266667
          Length = 934

 Score =  880 bits (455), Expect = 0.0
 Identities = 510/529 (96%), Gaps = 2/529 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctatggaattatgcctacttagcacaagacctagtttagagtatgaacctggatac 65
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctatggaacaatgcctacttagcacaagacctagtttagagtatgaacctggatac 265

                                                                       
Query: 66  cctgagattttattatcttaagtttaattacttttgtgccaggaaaaaggtttatgtctt 125
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 266 cctgagattttattatcttaagtttaattacttttgtgccaggaaacaggtttatgtctt 325

                                                                       
Query: 126 agttttactagctaaaaagattaaggaacatcatatctcttctacctctaaattatgtca 185
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 326 agttttactagctaaaaaaattaaggaacatcatatctcttctatctctaaattatgtca 385

                                                                       
Query: 186 cctgtgtaaaatttgtgtaattctggttagatgacaagac--tattcaaactaaacacac 243
           |||||||||||||||||||||||||||||||| |||||||  |||| |||||||||||||
Sbjct: 386 cctgtgtaaaatttgtgtaattctggttagataacaagactgtattaaaactaaacacac 445

                                                                       
Query: 244 tgatgtgatttcaataagaatagacccaatagacaccagttgcacagctctctgcaaaca 303
            | |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggctgtggtttcaataagaatggacccaatagacaccagttgcacagctctctgcaaaca 505

                                                                       
Query: 304 ccatggagaaaatagtatcaatcttggatgcaagaaggatattgggttgaacacaactca 363
           ||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct: 506 ccatggagaaaatagtagcaatcttggaagccagaaggatattgggttgaacacaactca 565

                                                                       
Query: 364 gtagcaagtcctggttcaaacttcaaagggctgacactgtgtagtttatttgaggaatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtagcaagtcctggttcaaacttcaaagggctgacactgtgtagtttatttgaggaatat 625

                                                                       
Query: 424 ctatacacaacataatttaaaaactgttttttggtgatacttcaatactgtgaatataac 483
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 626 ctatacacaacataatttaaaaacggttttttggtgatacttcaatactgtgtatataac 685

                                                            
Query: 484 aaggattaaactattactgaatgaaaatgaggacttgacagctccagag 532
           |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 686 aaggattaaactataactgaatgaaaatgaggacttgacagctccagag 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 934
Length adjustment: 10
Effective length of query: 522
Effective length of database: 924
Effective search space:   482328
Effective search space used:   482328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no360_b12.g1 MSMg01no360_b12.g1 CHROMAT_FILE:
MSMg01no360_b12.g1 PHD_FILE: MSMg01no360_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:45 2005
         (456 letters)



>mm_chr4_30384649_30385504
          Length = 856

 Score =  837 bits (433), Expect = 0.0
 Identities = 451/457 (98%), Gaps = 2/457 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacaagaatatttcctactcttgctccccaccaaatttgccccagggaacactcttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 taacaagaatatttcctactcttgctccccaccaaatttgccccagggaacactcttaaa 597

                                                                       
Query: 61  atcaggtt-gattaaccaagaggaatatttttgttgtagtatgtcatggatatttgaagg 119
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atcaggttgga-taaccaagaggaatatttttgttgtagtatgtcatggatatttgaagg 538

                                                                       
Query: 120 gccatgtgttactgatgactcactcagaagatgggaggcactctcaatatttgctgaaat 179
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 537 gccatgcgttactgatgactcactcaggagatgggaggcactctcaatatttgctgaaat 478

                                                                       
Query: 180 attttcaatactataaaatccttcaggctaatatcagataagcatggaaaccatttctgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 attttcaatactataaaatccttcaggctaatatcagataagcatggaaaccatttctgt 418

                                                                       
Query: 240 gatgttcttatgaaaactgaactgttttctccttccttgtccttatttttatgcatcgtt 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gatgtccttatgaaaactgaactgttttctccttccttgtccttatttttatgcatcgtt 358

                                                                       
Query: 300 atctttaagtgtcctgtgttcaaaaggaaaataaaagtagatccatgctttggatgatag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atctttaagtgtcctgtgttcaaaaggaaaataaaagtagatccatgctttggatgatag 298

                                                                       
Query: 360 actaaaagtcatctaaaatttagattcgcaaaagaattggaaaaagatgttcatcactct 419
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 actaaaagccatctaaaatttagattcgcaaaagaattggaaaaagatgttcatcactct 238

                                                
Query: 420 aaccttttccaatttatctgacttatatttataaaat 456
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaccttttccaatttatctgacttatatttataaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)