Query= MSMg01no360_b12.b1 MSMg01no360_b12.b1 CHROMAT_FILE:
MSMg01no360_b12.b1 PHD_FILE: MSMg01no360_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:45 2005
(532 letters)
>mm_chr4_30265734_30266667
Length = 934
Score = 880 bits (455), Expect = 0.0
Identities = 510/529 (96%), Gaps = 2/529 (0%)
Strand = Plus / Plus
Query: 6 aattctatggaattatgcctacttagcacaagacctagtttagagtatgaacctggatac 65
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctatggaacaatgcctacttagcacaagacctagtttagagtatgaacctggatac 265
Query: 66 cctgagattttattatcttaagtttaattacttttgtgccaggaaaaaggtttatgtctt 125
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 266 cctgagattttattatcttaagtttaattacttttgtgccaggaaacaggtttatgtctt 325
Query: 126 agttttactagctaaaaagattaaggaacatcatatctcttctacctctaaattatgtca 185
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 326 agttttactagctaaaaaaattaaggaacatcatatctcttctatctctaaattatgtca 385
Query: 186 cctgtgtaaaatttgtgtaattctggttagatgacaagac--tattcaaactaaacacac 243
|||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||
Sbjct: 386 cctgtgtaaaatttgtgtaattctggttagataacaagactgtattaaaactaaacacac 445
Query: 244 tgatgtgatttcaataagaatagacccaatagacaccagttgcacagctctctgcaaaca 303
| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggctgtggtttcaataagaatggacccaatagacaccagttgcacagctctctgcaaaca 505
Query: 304 ccatggagaaaatagtatcaatcttggatgcaagaaggatattgggttgaacacaactca 363
||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct: 506 ccatggagaaaatagtagcaatcttggaagccagaaggatattgggttgaacacaactca 565
Query: 364 gtagcaagtcctggttcaaacttcaaagggctgacactgtgtagtttatttgaggaatat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtagcaagtcctggttcaaacttcaaagggctgacactgtgtagtttatttgaggaatat 625
Query: 424 ctatacacaacataatttaaaaactgttttttggtgatacttcaatactgtgaatataac 483
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 626 ctatacacaacataatttaaaaacggttttttggtgatacttcaatactgtgtatataac 685
Query: 484 aaggattaaactattactgaatgaaaatgaggacttgacagctccagag 532
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 686 aaggattaaactataactgaatgaaaatgaggacttgacagctccagag 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 934
Length adjustment: 10
Effective length of query: 522
Effective length of database: 924
Effective search space: 482328
Effective search space used: 482328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_b12.g1 MSMg01no360_b12.g1 CHROMAT_FILE:
MSMg01no360_b12.g1 PHD_FILE: MSMg01no360_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:45 2005
(456 letters)
>mm_chr4_30384649_30385504
Length = 856
Score = 837 bits (433), Expect = 0.0
Identities = 451/457 (98%), Gaps = 2/457 (0%)
Strand = Plus / Minus
Query: 1 taacaagaatatttcctactcttgctccccaccaaatttgccccagggaacactcttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 taacaagaatatttcctactcttgctccccaccaaatttgccccagggaacactcttaaa 597
Query: 61 atcaggtt-gattaaccaagaggaatatttttgttgtagtatgtcatggatatttgaagg 119
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atcaggttgga-taaccaagaggaatatttttgttgtagtatgtcatggatatttgaagg 538
Query: 120 gccatgtgttactgatgactcactcagaagatgggaggcactctcaatatttgctgaaat 179
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 537 gccatgcgttactgatgactcactcaggagatgggaggcactctcaatatttgctgaaat 478
Query: 180 attttcaatactataaaatccttcaggctaatatcagataagcatggaaaccatttctgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 attttcaatactataaaatccttcaggctaatatcagataagcatggaaaccatttctgt 418
Query: 240 gatgttcttatgaaaactgaactgttttctccttccttgtccttatttttatgcatcgtt 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gatgtccttatgaaaactgaactgttttctccttccttgtccttatttttatgcatcgtt 358
Query: 300 atctttaagtgtcctgtgttcaaaaggaaaataaaagtagatccatgctttggatgatag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atctttaagtgtcctgtgttcaaaaggaaaataaaagtagatccatgctttggatgatag 298
Query: 360 actaaaagtcatctaaaatttagattcgcaaaagaattggaaaaagatgttcatcactct 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 actaaaagccatctaaaatttagattcgcaaaagaattggaaaaagatgttcatcactct 238
Query: 420 aaccttttccaatttatctgacttatatttataaaat 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaccttttccaatttatctgacttatatttataaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|