BAC Information

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BAC

Clone NameMSMg01-360E18
Chromosome4 (Build37)
Map Location 117,268,252 - 117,268,732
singlet/doubletsinglet
Overlap genePrnpip1
Upstream geneLOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093
Downstream geneDmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E18.T7 (MSMg01no360_e18.b1)MSMg01-360E18.TJ (MSMg01no360_e18.g1)
ACCAG469506AG469507
length759601
length of high quality
(start - end)		484 (45 - 528)39 (159 - 197)
definitionCHROMAT_FILE: MSMg01no360_e18.b1 PHD_FILE: MSMg01no360_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:00 2005CHROMAT_FILE: MSMg01no360_e18.g1 PHD_FILE: MSMg01no360_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCAAATGCTCTCATTTCACAGTCCCGTTTCGGGAGCCCCGCTTGG
GAGTCCCGCTTTGTCTCCTTGCTGTTGTTCTTCTAGCCCCCAAGCTGTTC
ACATCATGGTTGTTGGAAAAGGCCTGATTAGTGCAGCACTGAGAAATGGG
AACTGAAGTGGCAGGAGAAACCCCACTGCAGCAAAGAAATCTGCTCTTGT
GACAAAATCGTTTTGTGTCCATCTTTCTTCAGAGGTGGATGAATTAATAC
TCCAGATTTGTAGGGCTTGAGGCTGTAGTCCCAGGTACTTATTAAGGTGA
GTTTTAGTTTAATGGGCGTGGATTTAATTTTCTCCCCCTACTCTTCTTCC
TCCTCTCCTTCCTCCTCCTCCTCTTCTCTTCCTCTTCCTCCTCTCCCTCC
TCCAGTTATTGTTTTGAGACATAGTTTTTCTGTGTAGCCCTGGCTGTCCT
GGAACTCACTCTGTAAACCAGCAGGCTGGCCTCAGACTCAGAGCTCTGCC
TGCCTCCGTCTCCCGAATGCTGAGATTAAAGTTGTGTGGCAATACCACCG
CCAACACTCCGGACTATTCTTCTGTACTTTTTATAGAAAAGAAACTAATA
GGGGTTAGTTTATTTAGTTCCCCGGTCCTCCCCGACAGGGCTTTCCCCCC
CTACCCGTGGGTCCTGGGGCTCCCCAAGAAAAATTTGTCTTCTGTTTGTC
CATTGGGGN

NNNNTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGATGXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAATAAAGGTAGCAGAACGCTATNNCTTGACAATCAGGNAAGC
ANNTCAAGNAAAAACCCTAACACAAAAGGGAAAACATCTAAATGGGTATT
TTTTAATACATAAATAAACTTTCAATATGATACTGACCCTTTGCTTTTAT
CTNCTTANAAAATGAAAACAAAGGGAACCAAAAGCAGCTTTATCAGAATT
GTANNATCTANANCAGAAANNTATAACTGGTTTTAATGGTGTAAAGGCAG
TGGGTTTTAAAAATACTGGAAACCCAAGGGTAAAAAAAAGGGTTTCCCCC
CCCTGTGGGTAACAAAAAAGGGAACCCCCCAGGGAAATACTGGGAACAAA
AGGGGGGAATTTCCCAAAAAAAATTCAGGGGTCCCCCTTTTGGGGCCTTA
TAAAAAAAAAAAGGCGGGGGGCCGGGGAAATTTTTTTTTCCCACAAAAAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e18.b1 MSMg01no360_e18.b1 CHROMAT_FILE:
MSMg01no360_e18.b1 PHD_FILE: MSMg01no360_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:00 2005
         (484 letters)



>mm_chr4_117268049_117268932
          Length = 884

 Score =  922 bits (477), Expect = 0.0
 Identities = 480/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagcaaatgctctcatttcacagtcccgtttcgggagccccgcttgggagtccc 63
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcagcaaatgctctcatttcacagtcccgtttcgggagccccgctcgggagtccc 263

                                                                       
Query: 64  gctttgtctccttgctgttgttcttctagcccccaagctgttcacatcatggttgttgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctttgtctccttgctgttgttcttctagcccccaagctgttcacatcatggttgttgga 323

                                                                       
Query: 124 aaaggcctgattagtgcagcactgagaaatgggaactgaagtggcaggagaaaccccact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaggcctgattagtgcagcactgagaaatgggaactgaagtggcaggagaaaccccact 383

                                                                       
Query: 184 gcagcaaagaaatctgctcttgtgacaaaatcgttttgtgtccatctttcttcagaggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcagcaaagaaatctgctcttgtgacaaaatcgttttgtgtccatctttcttcagaggtg 443

                                                                       
Query: 244 gatgaattaatactccagatttgtagggcttgaggctgtagtcccaggtacttattaagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatgaattaatactccagatttgtagggcttgaggctgtagtcccaggtacttattaagg 503

                                                                       
Query: 304 tgagttttagtttaatgggcgtggatttaattttctccccctactcttcttcctcctctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgagttttagtttaatgggcgtggatttaattttctccccctactcttcttcctcctctc 563

                                                                       
Query: 364 cttcctcctcctcctcttctcttcctcttcctcctctccctcctccagttattgttttga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttcctcctcctcctcttctcttcctcttcctcctctccctcctccagttattgttttga 623

                                                                       
Query: 424 gacatagtttttctgtgtagccctggctgtcctggaactcactctgtaaaccagcaggct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gacatagtttttctgtgtagccctggctgtcctggaactcactctgtaaaccagcaggct 683

            
Query: 484 g 484
           |
Sbjct: 684 g 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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