BAC Information

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BAC

Clone NameMSMg01-360G05
Chromosome4 (Build37)
Map Location 118,959,870 - 118,960,312
singlet/doubletsinglet
Overlap geneYbx1
Upstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19
Downstream genePpih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G05.T7 (MSMg01no360_g05.b1)MSMg01-360G05.TJ (MSMg01no360_g05.g1)
ACCAG469575AG469576
length725736
length of high quality
(start - end)
317 (74 - 390)439 (74 - 512)
definitionCHROMAT_FILE: MSMg01no360_g05.b1 PHD_FILE: MSMg01no360_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:07 2005CHROMAT_FILE: MSMg01no360_g05.g1 PHD_FILE: MSMg01no360_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAGGATCCGC
GGAATTCTAGTCTTTCGACTGTCCTTGGATCAAGATGTTAGAACTTTCAG
CTCCTTCAGCACTATGTCTACCTGTATGCTGCCATGCTTCCCTCCATGAT
GATAATGGACTGAACCCTTCTGAAACTGTAAACCAGTCCCTAGTGAATGT
TTAGCCATGGCGTCTCTTCTGAGTGATGGAACCCAAAGACAGCTCCCATT
TGAAATATTACTTCTATCTACGGGTGAATAAACTCAGGCTTGGCGAAGTC
ACCGACACACTTAACTTTTTTATATAGCTAACAAATGGCCCAGGCTGGCT
GCATACCCAGTTTTGTCTGACTCCAAAGTTCCCTGGTGTTCAGCTACTCC
AAATTACCTTTTTCTAACATAGAGAAATCCACAGTCATATCATGACGGCC
TCTATCCCACACAGAAACGGTTGCTACCCTATTGAGGATTATTGAACGAA
TATCTGGCATCTGTATATACTGGCTATTTTCTACACATATCGAGTTCGCC
ATCCTTGAATTAAATTTCATTTGATTTATCGCTACGTTACTCAGCATGAT
GACCCGACCTTTTTCTTCTCCCCCTTTGACCCTCCCTGCCTTCTCACATT
TTTGTACTTGTTGTTGTGCTCTACCATATACTTTTATTACCCCTGTCTTC
TGCATTTTTTTTTTTCTCCCCACTT
ACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGTAAGGGATATATATA
CAGAAGAACCCTGTCTCAAAACAAACAAACAAACAAACAACCACCCATTG
AGTATGCTTAAATCCACTGTTCCATGGAGGGTATTTTTTATTCACAATAA
ACTACTGCTGCTGGATCATGTATCTAACTTTAAAAATAGGATAATGCTGG
CAGTAAGACAGTATTAGTTCCTAAGAAATACTTTATTTTGTAGATAAGAC
AGAGAACAATGAAAACCTACTCCACAAATAGACGTTATTAGGAGTGACTA
GACCAGCCTACTTACAAAGCATATACATGTAGATATCAGGAAGAAAACTT
GACAGGTCCTAAGGTAAAATTTCACCCAAGCAAAAATAGCACTGGCTGGA
ACACATTAAATCAACTTACTAAAAGGACAGAGGGAACACTATTGGAATTG
CAGAAATGGCTCAGTAGTTAAAAGCACTTGCTCTAGCCAGAGCCAGGCTT
GGATCTCAGCACCTACACTCAACTGACACTCCAACTCCAGGAGATTCAAT
TCCCTTTTTACAGGCTCTGCTGGTCCCCACGCAAACATGTTGATGCCCAC
TACGACATCTAGTTCGACAAATTACACCAAGCGTTCTCTACCCACCATTT
AATCCTCCACATTCTGGTCTTCAAGCGCTTCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g05.g1 MSMg01no360_g05.g1 CHROMAT_FILE:
MSMg01no360_g05.g1 PHD_FILE: MSMg01no360_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:07 2005
         (439 letters)



>mm_chr4_118959674_118960512
          Length = 839

 Score =  799 bits (413), Expect = 0.0
 Identities = 434/443 (97%), Gaps = 4/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagtcagtaagggatatatatacagaagaaccctgtctca----aaacaaacaaa 56
           ||||||||||||||||||||||| |||||||||||||||||||||    |||||||||||
Sbjct: 197 caggacagtcagtaagggatataaatacagaagaaccctgtctcaaaacaaacaaacaaa 256

                                                                       
Query: 57  caaacaaacaaccacccattgagtatgcttaaatccactgttccatggagggtatttttt 116
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caaacaaacaactacccattgagtatgcttaaatccactgttccatggagggtatttttt 316

                                                                       
Query: 117 attcacaataaactactgctgctggatcatgtatctaactttaaaaataggataatgctg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attcacaataaactactgctgctggatcatgtatctaactttaaaaataggataatgctg 376

                                                                       
Query: 177 gcagtaagacagtattagttcctaagaaatactttattttgtagataagacagagaacaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcagtaagacagtattagttcctaagaaatactttattttgtagataagacagagaacaa 436

                                                                       
Query: 237 tgaaaacctactccacaaatagacgttattaggagtgactagaccagcctacttacaaag 296
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaaaacccacaccacaaatagacgttattaggagtgactagaccagcctacttacaaag 496

                                                                       
Query: 297 catatacatgtagatatcaggaagaaaacttgacaggtcctaaggtaaaatttcacccaa 356
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 497 catatacatgtagatatcaggaagaaaacttgacaggtcctaaggtaagatttcacccaa 556

                                                                       
Query: 357 gcaaaaatagcactggctggaacacattaaatcaacttactaaaaggacagagggaacac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcaaaaatagcactggctggaacacattaaatcaacttactaaaaggacagagggaacac 616

                                  
Query: 417 tattggaattgcagaaatggctc 439
           |||||||||||||||||||||||
Sbjct: 617 tattggaattgcagaaatggctc 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)