BAC Information

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BAC

Clone NameMSMg01-360H22
Chromosome4 (Build37)
Map Location 17,208,736 - 17,208,970
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383994, LOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360H22.T7 (MSMg01no360_h22.b1)MSMg01-360H22.TJ (MSMg01no360_h22.g1)
ACCAG469655AG469656
length776751
length of high quality
(start - end)		442 (43 - 484)429 (72 - 500)
definitionCHROMAT_FILE: MSMg01no360_h22.b1 PHD_FILE: MSMg01no360_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:15 2005CHROMAT_FILE: MSMg01no360_h22.g1 PHD_FILE: MSMg01no360_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGGAAAATGCACATTTAATTGACCACAGAATTACTAAAACTTCAAAG
ATTGTGAAGAGCTTGGAATCTTACAAATATATGACCTATTAAAAATAAGC
TTGGGCTTTGTTGACCTCTTAGCATCCATACATTATCCAATTCTTATGTA
ATTTAACCACTAGGTAATTCCTGGGATTATAAACAGACCACTAATTTCCA
TCAACCGAAAGTTTAAGAACACTAGCATCTGAATGCTATGGCTGTGATTT
TCTGGATTTGCTATAACCTACCAATCTAATGTTTCCACTAATGTATTCAA
AATCTTCTTGGTTTATGATTTTCATTGTTTGAATTTTATAAAATTTCAAG
AAACTTTTATCACATTGAAACATGCATTTGCAGTAACTTGATAGATTTTC
CTACAGTATGGTCATTTCTATTCAACTTCAAAATACATTGTTTGTTATCC
CATCTGAAGTAAGATTTGTGTTTTTCTGTTGACAGGTAAACTGTCGTTAT
TTAATGCTTATCTAACTTATTACAAATCTTTTTCACACCTACCGAAAGTG
GACTCGAGAAGAACTCTCTTCTCCCCTGCTGGGGAATTAACCTGAGGACC
CGCCCGCTTGAATCCCTAAAAACCCTCCCCTCCCCGGCCCCGGGAAAATT
TAAAAAGGTTCCTCCCCTCCCCCCTCCCACGGGGGGTGGGGTTTTTTTTT
TATACGGGCCCCACGGGTTTTCCGGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTCATCTCTGAGCCCCATTTTTTAA
TAGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATA
TTGGTTATTATTCCCCTATCTAATTTAGGATAGAGAAAGATCCTTTCCCA
ATCTCTTGGTGGTCTTTTTTGTCTTATTGAGGGTGTCAGCAGTTCTATTA
GCAGTGTCCTTTACCTGACAGATTTTTTTCCAGTTTTATGAGGTCCCATT
TATCAATTGTTGATCTTAGAGCCTGAGCCATTGATGATCTGAACAGGAAA
TAGTCTCCAGTATCAATTCTTTCAAAGCTATTTCCTAGTTTCTCCTCTAT
TAGATTTAGTGTATCCAGTTGAAGTCCACCATTCACTTGAACTTGAGTTT
TATACAGGGTGTACAACATGTGTAACAGTTGTACTTGCATTCTTTTACAT
GCAGACAGCCAGTTAGGCCAGCACCATTTGTTGAATATGCTTTCTCTTTT
CACTGTAAATTCGTGTCATCTTTGTTAAAAACAAGTGATAATAAGATATG
TTTTTTGGCTGGGGATTGATCCGTTCCCTTGACAACTTTTTTGTGGCGGG
GAACCCCCCGAGGGAAGGTTTGTTTGGTTTGGTTGGCTGGTTTCCNTTTA
CGGCCGCATTTTCCACTCCTAATCTCAATTAACTCCTTTTTATCGTTTTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_h22.b1 MSMg01no360_h22.b1 CHROMAT_FILE:
MSMg01no360_h22.b1 PHD_FILE: MSMg01no360_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:15 2005
         (442 letters)



>mm_chr4_17208532_17209373
          Length = 842

 Score =  408 bits (211), Expect = e-118
 Identities = 229/235 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggaaaatgcacatttaattgaccacagaattactaaaacttcaaagattgtg 64
           |||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcttggaaaatgcatatctaattgaccacagaattactaaaacctcaaagattgtg 264

                                                                       
Query: 65  aagagcttggaatcttacaaatatatgacctattaaaaataagcttgggctttgttgacc 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagagcttggaattttacaaatatatgacctattaaaaataagcttgggctttgttgacc 324

                                                                       
Query: 125 tcttagcatccatacattatccaattcttatgtaatttaaccactaggtaattcctggga 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 tcttagcatccatacattatccaattcttatgtaatttaaccaataggtaattcctggga 384

                                                                  
Query: 185 ttataaacagaccactaatttccatcaaccgaaagtttaagaacactagcatctg 239
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 ttataaacagaccactaatttccatcaactgaaagtttaagaacactagcatctg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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