Query= MSMg01no360_k12.b1 MSMg01no360_k12.b1 CHROMAT_FILE:
MSMg01no360_k12.b1 PHD_FILE: MSMg01no360_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:27 2005
(450 letters)
>mm_chr4_72787245_72788094
Length = 850
Score = 816 bits (422), Expect = 0.0
Identities = 440/446 (98%)
Strand = Plus / Minus
Query: 5 gaattctaagacttactggactgtggcgagtcttgacctgccagttctatggtagtacat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattctaagacttagtggactgtggcgagtcttgacctgccagttctatggtagtacat 591
Query: 65 gcaagctgagctcatggtggcataggaaaaagttaagctgtatagcaccatcagcaaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcaagctgagctcatggtggcataggaaaaagttaagctgtatagcaccatcagcaaatg 531
Query: 125 ccactgtgttatgatgttcacaattgccatcagggtgctaaatacaatcttgaaaggtta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ccactgtgttatgatgttcacaattgccatcagggtgctaaatacaatcttgaaaggtta 471
Query: 185 acaaactagcaagatagaagctaccaactgtcttctgcttctcccctctccccactttcc 244
|||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct: 470 acaaactagcaagatagaagctaccagctgtctgctgcctctcccctctccccactttcc 411
Query: 245 tttagagatgattttcaaactcatttaaattaaaaatggacaagtgggtcttctgtccac 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 410 tttagagatgattttcaaactcatttaaaataaaaatggacaagtgggtcttctgtccac 351
Query: 305 agcccgatctttgctgcataagattactttcgacaatataaaatgcataaatgccttttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 350 agcccgatctttgctgcataagattactttcgacaatataaaatgcataaatgccctttc 291
Query: 365 atcacatgaggaaagcatgcctactggcaaatgaatcatattataaaaattgattgtatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atcacatgaggaaagcatgcctactggcaaatgaatcatattataaaaattgattgtatc 231
Query: 425 ccaaaaggggaagtgttattgaagag 450
||||||||||||||||||||||||||
Sbjct: 230 ccaaaaggggaagtgttattgaagag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_k12.g1 MSMg01no360_k12.g1 CHROMAT_FILE:
MSMg01no360_k12.g1 PHD_FILE: MSMg01no360_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:28 2005
(440 letters)
>mm_chr4_72644013_72644852
Length = 840
Score = 801 bits (414), Expect = 0.0
Identities = 437/448 (97%), Gaps = 8/448 (1%)
Strand = Plus / Plus
Query: 1 atatcttatttaataatgctgcaatgaacagagacacaggatctaatgcattgtgccgat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 196 atatcttatttaataatgctgcaatgaacagagacacaggatctaatgcattgtgctgat 255
Query: 61 gtagattttttt-agcatattactgggagtttaaagggtatatcatgaggataaatcttt 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtagattttttttagcatattactgggagtttaaagggtatatcatgaggataaatcttt 315
Query: 120 tttcaaacaaacaaacaaacaaacaagcacactaaaattagaa----aaaaaaaacagaa 175
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 316 tttcaaacaaacaaacaaacaaacaagcacactaaagttagaaggaaaaaaaaaacagaa 375
Query: 176 acagaaacaaatcagccctatactgatttttgtagtaactataccagtttccatgccctc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acagaaacaaatcagccctatactgatttttgtagtaactataccagtttccatgccctc 435
Query: 236 cagtagccgatcaaaagtcttttcttcctgatccttaccaatgctttgctgttgttgttg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagtagccgatcaaaagtcttttcttcctgatccttaccaatgctttgctgttgttgttg 495
Query: 296 ---ctgctgctgctgctattttttgtaaatataatttataattaaaatataattatatca 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgctgctgctgctgctattttttgtaaatataatttataattaaaatataattatatca 555
Query: 353 tttccccctttcctttttctctccagtgcctctaagtttaattaattaattaatttcttt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttccccctttcctttttctctccagtgcctctaagtttaattaattaattaatttcttt 615
Query: 413 aattaatacagaaacacacacatgcatg 440
|||||||||||||||||||||| |||||
Sbjct: 616 aattaatacagaaacacacacacgcatg 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
