MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-361A07
Chromosome	4 (Build37)
Map Location	127,951,805 - 127,952,326
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Gja4, Gjb3, Gjb4, Gjb5, LOC667296, LOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
Downstream gene	Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gja4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14612 MGI:95715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gjb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14620 MGI:95721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gjb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14621 MGI:95722
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gjb5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14622 MGI:95723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667296 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC635169 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:635169
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	4930465A12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74989 MGI:1922239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Hmgb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69317 MGI:1916567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930546G22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75242 MGI:1922492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Zscan20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269585 MGI:2679268
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384059 MGI:3045221
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54383 MGI:1860454
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A3galt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215493 MGI:2685279
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC039093 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230761 MGI:2652839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins pseudo : _no_value

name	Trim62 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67525 MGI:1914775
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242669 MGI:2442093
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ak2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11637 MGI:87978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ibrdc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75234 MGI:1922484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 83 ESTs, 5 Proteins

name	Tmem54 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66260 MGI:1913510
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hpca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15444 MGI:1336200
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fndc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384061 MGI:1917614
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	S100pbp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74648 MGI:1921898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Yars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107271 MGI:2147627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C77080 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97130 MGI:2140651
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gja4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328122 GeneID:14612 MGI:95715
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein alpha 4 transcript_id : NM_008120.2

name	Gjb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680012 GeneID:14620 MGI:95721
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein beta 3 transcript_id : NM_008126.1

name	Gjb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:49355797 GeneID:14621 MGI:95722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein beta 4 transcript_id : NM_008127.3

name	Gjb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353936 GeneID:14622 MGI:95723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein beta 5 transcript_id : NM_010291.3

name	LOC635169 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253103 GeneID:635169
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical LOC635169 transcript_id : XM_989799.2

name	4930465A12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372497 GeneID:74989 MGI:1922239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930465A12 gene transcript_id : XM_897643.2

name	Hmgb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367390 GeneID:69317 MGI:1916567
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : high-mobility group box 4 transcript_id : NM_027036.2

name	4930546G22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253120 GeneID:75242 MGI:1922492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930546G22 gene transcript_id : XM_001474811.1

name	Zscan20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41054997 GeneID:269585 MGI:2679268
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and SCAN domains 20 transcript_id : NM_177758.3

name	Tlr12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45430000 GeneID:384059 MGI:3045221
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 12 transcript_id : NM_205823.1

name	Phc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375739 GeneID:54383 MGI:1860454
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polyhomeotic-like 2 (Drosophila) transcript_id : NM_018774.2

name	A3galt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78486564 GeneID:215493 MGI:2685279
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) transcript_id : NM_001009819.2

name	BC039093 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487368 GeneID:230761 MGI:2652839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC039093 transcript_id : NM_001081098.1

name	Trim62 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342487 GeneID:67525 MGI:1914775
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 62 transcript_id : NM_178110.2

name	Adc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344110 GeneID:242669 MGI:2442093
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arginine decarboxylase transcript_id : NM_172875.2

name	Ak2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803229 GeneID:11637 MGI:87978
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate kinase 2 transcript_id : NM_001033966.2

name	Ak2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131139 GeneID:11637 MGI:87978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate kinase 2 transcript_id : NM_016895.3

name	Ibrdc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253106 GeneID:75234 MGI:1922484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 83 ESTs, 5 Proteins product : IBR domain containing 3 transcript_id : XM_204030.6

name	Tmem54 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384079 GeneID:66260 MGI:1913510
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 54 transcript_id : NM_025452.3

name	Hpca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254583 GeneID:15444 MGI:1336200
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hippocalcin transcript_id : NM_010471.2

name	Fndc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47087147 GeneID:384061 MGI:1917614
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibronectin type III domain containing 5 transcript_id : NM_027402.2

name	S100pbp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801813 GeneID:74648 MGI:1921898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : S100P binding protein transcript_id : NM_029036.2

name	Yars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351106 GeneID:107271 MGI:2147627
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tyrosyl-tRNA synthetase transcript_id : NM_134151.3

name	C77080 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361970 GeneID:97130 MGI:2140651
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence C77080 transcript_id : NM_001033189.2

name	Gja4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680003 CCDS:CCDS18667.1 GeneID:14612 MGI:95715
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0001568 - blood vessel development [Evidence IMP]; GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : connexin 37 product : gap junction membrane channel protein alpha 4 protein_id : NP_032146.1

name	Gjb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680013 CCDS:CCDS18668.1 GeneID:14620 MGI:95721
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA]; GO:0001890 - placenta development [Evidence IMP] codon_start : 1 note : connexin 31; gap junction protein beta 3 product : gap junction membrane channel protein beta 3 protein_id : NP_032152.1

name	Gjb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680015 CCDS:CCDS18669.1 GeneID:14621 MGI:95722
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : connexin 30.3 product : gap junction membrane channel protein beta 4 protein_id : NP_032153.1

name	Gjb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753996 CCDS:CCDS18670.1 GeneID:14622 MGI:95723
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : connexin 31.1 product : gap junction membrane channel protein beta 5 protein_id : NP_034421.1

name	LOC635169 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253104 GeneID:635169
definition	codon_start : 1 product : hypothetical protein protein_id : XP_994893.2

name	4930465A12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895170 GeneID:74989 MGI:1922239
definition	codon_start : 1 product : hypothetical protein LOC74989 protein_id : XP_902736.1

name	Hmgb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312264 CCDS:CCDS18671.1 GeneID:69317 MGI:1916567
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 exception : mismatches in translation product : high-mobility group box 4 protein_id : NP_081312.1

name	4930546G22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253121 GeneID:75242 MGI:1922492
definition	codon_start : 1 product : hypothetical protein LOC75242 protein_id : XP_001474861.1

name	Zscan20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244254 CCDS:CCDS18672.1 GeneID:269585 MGI:2679268
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : zinc finger with KRAB and SCAN domains 20 product : zinc finger protein 31 protein_id : NP_808426.1

name	Tlr12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45430001 CCDS:CCDS18673.1 GeneID:384059 MGI:3045221
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 product : toll-like receptor 12 protein_id : NP_991392.1

name	Phc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055280 CCDS:CCDS18674.1 GeneID:54383 MGI:1860454
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0031519 - PcG protein complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 note : polyhomeotic 2 protein; early development regulator 2 (homolog of polyhomeotic 2) product : polyhomeotic-like 2 protein_id : NP_061244.1

name	A3galt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57528488 CCDS:CCDS18675.1 GeneID:215493 MGI:2685279
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0001962 - alpha-1,3-galactosyltransferase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006688 - glycosphingolipid biosynthesis [Evidence ISS] codon_start : 1 note : iGb3 synthase; galactosyltransferase product : alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) protein_id : NP_001009819.1

name	BC039093 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487369 GeneID:230761 MGI:2652839
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : novel protein containing Zinc finger, C2H2 type domains product : hypothetical protein LOC230761 protein_id : NP_001074567.1

name	Trim62 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017451 CCDS:CCDS18677.1 GeneID:67525 MGI:1914775
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : tripartite motif-containing 62 protein_id : NP_835211.1

name	Adc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370330 CCDS:CCDS18678.1 GeneID:242669 MGI:2442093
definition	GO_function : GO:0008792 - arginine decarboxylase activity [Evidence IEA]; GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0007283 - spermatogenesis [Evidence ISS] codon_start : 1 note : novel protein containing a Pyridoxal-dependent decarboxylase, pyridoxal binding domain (likely ortholog of H. sapiens ornithine decarboxylase-like) product : ornithine decarboxylase-like protein protein_id : NP_766463.1

name	Ak2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328230 CCDS:CCDS18679.1 GeneID:11637 MGI:87978
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004017 - adenylate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : adenylate kinase 2 isoform b protein_id : NP_058591.2

name	Ak2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77020262 CCDS:CCDS18680.1 GeneID:11637 MGI:87978
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004017 - adenylate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : adenylate kinase 2 isoform a protein_id : NP_001029138.1

name	Ibrdc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253107 GeneID:75234 MGI:1922484
definition	codon_start : 1 product : IBR domain containing 3 protein_id : XP_204030.6

name	Tmem54 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270299 CCDS:CCDS18681.1 GeneID:66260 MGI:1913510
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : beta-casein-like protein protein_id : NP_079728.2

name	Hpca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754240 CCDS:CCDS18682.1 GeneID:15444 MGI:1336200
definition	GO_function : GO:0003779 - actin binding [Evidence ISS]; GO:0005509 - calcium ion binding [Evidence ISS] codon_start : 1 product : hippocalcin protein_id : NP_034601.1

name	Fndc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059145 CCDS:CCDS18683.1 GeneID:384061 MGI:1917614
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : peroxisomal protein product : fibronectin type III domain containing 5 protein_id : NP_081678.1

name	S100pbp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62899073 CCDS:CCDS18684.1 GeneID:74648 MGI:1921898
definition	codon_start : 1 product : S100P binding protein protein_id : NP_083312.1

name	Yars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981647 CCDS:CCDS18685.1 GeneID:107271 MGI:2147627
definition	GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]; GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : tyrosyl-tRNA synthetase protein_id : NP_598912.2

name	C77080 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677516 CCDS:CCDS18686.1 GeneID:97130 MGI:2140651
definition	codon_start : 1 product : hypothetical protein LOC97130 protein_id : NP_001028361.1

name	LOC667296 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667296
definition	number : 1 pseudo : _no_value

name	LOC667354 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253105 GeneID:667354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_031034.1

clone name	MSMg01-415I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044I05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-361A07.T7 (MSMg01no361_a07.b1)	MSMg01-361A07.TJ (MSMg01no361_a07.g1)
ACC	AG470053	AG470054
length	758	1,055
length of high quality (start - end)	526 (52 - 577)	---
definition	CHROMAT_FILE: MSMg01no361_a07.b1 PHD_FILE: MSMg01no361_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:55 2005	CHROMAT_FILE: MSMg01no361_a07.g1 PHD_FILE: MSMg01no361_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:55 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XCGCGGAATTCTGTTATGACGTCATTTATATAAAATCATACTCCTGGTTG TGAATGTACAGCTCATTAGATTGCTGGCAAAAAAATGGCCGTCCTTTGCG AGGAGGAATGGGATGAGGAACTGTGGGAGAGGGGACTGGGAGGGGGGATC TAACAGAACCTAGATCTGGACCATTCCCTCCTTCTCAGCCATGCACGATT CACTGACAGCTCTCAACCCAGCTTCGGCTACCACAGTTCCACTTCCCCTC ACTGGACAGTCAGCTTTCCCAGAGTCCCAGCAAATGAGACTTCAGTGCAC CTTCCGTGTTCACAGCCACAGTCACAGACCTTGCTTATGATCTGCACTTG TTCATGCTTCCACTTCATGAGCGTGATCCACCTCAGGACCCACACGCATA CTCCTGTGACACTCACAGTCCCCTCTGCTCCCTGTTAACCCTTCCTCTTC TGCCTCAGCCTAACTTCGGCCACTGAGTTTACCCACATCTTTGTACTTAC TAGCGTGGAAAGGAATTGTGTGTGTGTGTGTGTGCTGCCTCTAATTTCGC AGTTTTTGATGACAAGGCCTCTCGCTGTATAAACGAATATTCTGGAACTT TCATAATCCTCCTAACTTCTCTCACGCCTGCTGTTTTCCCCCTCCTTTTC ATCATGTGCAGTCTTCTTGTAACTTCTCTTACAATATTCACCCAATCTCC TCTTTCTT	TTATAAAAAAAAATAACTGNTTCTCAGGGAGGTAGGTATGTATGCGGCGA AGTGAAGGGGGAGGAGGAGAAGAGAAGAGGAGGGAACGAGAGGGGGAAGC GAGAGGGAGGGGGGGGGGGGGAGGGACAGATGGGGGGAGAGGGGTGAGGC ATAAACACAGGAAGAAAACGCGGTCAATCCCCCATAACAAATGCACTCAT AAGCCCCTAACCACGAACGCGGCAAGCTCCCGCATGATACCCTTCCCATA CGAAACCCAACAACGACATTAGTCTATCCAAAGAATAAAGACAACACACC CACCTAGACCCGTGCGGGGCGGGAGCGGGGGGAAAGGGAGTGGGGGAGGG GCGGCGCGGAGGCGGGTTGAGTGCGACAGCGCGGCCCTTCACCAATGTTC CCGCGTGAGCGTGCGCGCGGCAGAGGTGATGTCGGGGGGAGGGGGGGTAT AACGGGCGTCTGCCCCTTGCCTTATCGCCATAGCCTCGCCCGTAGGCGTG CGCCGCTATATATCATGCGTGGTCCACCCTGACCGGCGCCGCGGAGACGT GGAGTGGCGTCCGATAGGTCCGAGCGTCAGTTTACCGCGGCAGCCCGAGC GATCTCTCGACCCAATACCAGAGGCGTGACGCGCTTTATGTCACACCTGT AATACACGTGCGCCCATTGCCGACTGAAGTCAAGTGTGTGGGCGCCGTGT GCGGACGGAGATACCACTGCTGTAGGAGAGCGAGCGCGTGTACGAGGCAC CGACGAAAACCATGACCGCGTAATGCGCCATAGACGGCGCCGCCCGTTTC GTCTCCCCCAACGCGTACTCGTCTCCTGCACCGATAGTGTAACACGGCCG CACGTAGATGACCGCCTGCGCGNGCGCCGTACGACGCGTATTAATCATTA CATTCTGTAACCCACACCTATCACACGCGTACGAAGCGCACACAGGCGAT ATACGAACGCGTGTCACGTCGCGCGCGTTTATAGANGCGAGCGCCGCCCG CACGACCGACATTAGTCTATCGCACCATGCCGTAGGCGCGACGATCGTAC CGGCG
quality values	Open. Hide. 0 3 6 6 8 8 6 8 8 10 10 23 23 28 37 33 30 30 36 36 26 32 32 36 36 37 47 44 44 39 50 27 25 18 15 15 9 9 9 10 9 11 17 21 28 30 28 28 31 31 31 36 59 59 59 36 36 36 33 31 31 37 28 28 13 13 9 8 8 8 8 10 19 34 37 37 59 59 59 59 59 57 53 53 53 53 53 53 57 53 57 57 59 59 59 59 59 57 68 68 68 68 68 68 68 54 50 50 50 50 50 50 50 68 68 50 50 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 68 59 59 57 57 57 57 68 68 68 48 48 46 46 46 48 50 50 50 50 50 68 57 57 57 57 57 57 59 68 68 68 68 68 57 68 68 68 68 68 68 57 50 57 57 57 57 57 68 68 57 57 57 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 59 59 59 59 68 57 57 57 57 57 68 68 68 68 68 68 43 43 35 35 35 44 44 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 62 62 62 62 62 62 62 68 68 68 68 68 62 62 68 62 62 62 62 62 62 62 62 68 62 62 43 43 31 44 44 62 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 57 57 57 59 52 52 57 57 57 59 59 68 68 68 68 68 68 68 68 59 59 57 52 52 59 59 59 59 57 57 57 57 57 59 57 57 59 59 57 57 57 57 57 57 57 57 57 57 59 59 59 54 54 54 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 59 59 68 68 68 68 68 68 59 59 57 57 57 59 57 57 57 59 59 57 59 59 57 54 54 59 57 42 37 30 42 44 48 48 54 48 57 48 57 57 68 57 57 54 57 59 59 59 59 59 48 48 48 48 48 48 57 57 59 59 59 59 48 48 48 59 57 57 57 57 57 48 48 48 48 48 41 41 30 30 30 37 37 37 37 43 59 43 47 46 47 46 46 41 37 37 32 26 25 27 30 30 36 31 36 41 41 44 39 47 39 27 27 25 24 26 37 39 43 37 33 30 25 25 30 30 22 22 23 23 23 23 23 34 37 31 25 21 13 14 19 27 34 37 21 21 11 21 19 28 28 32 36 36 37 41 36 24 26 23 23 26 19 22 25 28 24 31 29 29 14 15 13 15 10 10 8 13 8 9 10 10 7 7 7 7 7 7 9 11 13 8 8 9 8 8 8 8 11 8 8 8 8 8 8 10 9 9 11 8 8 8 8 8 8 12 19 10 10 9 10 8 8 6 6 8 8 8 9 11 8 8 8 8 8 8 17 11 10 10 15 15 9 8 8 10 10 10 9 10 11 10 10 10 10 10 10 8 6 6 7 8 10 10 9 7 10 6 6 6 6 11 9 10 10 10 10 10 10 11 11 12 21 15 15 11 11 13 11 11 12 18 9 9 8 8 8 8 8 6 6 6 6 6 8 8 8 8 12 10 10 10 9 9 9 10 13 10 10 9 9 10 10 10 8 10 8 13 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 9 9 10 9	Open. Hide. 8 10 10 8 8 6 6 6 7 7 11 16 13 11 12 10 10 10 3 0 3 13 10 9 9 9 11 12 10 10 10 8 8 8 8 8 6 6 6 6 8 6 6 6 8 8 8 8 8 8 10 10 10 8 8 8 8 6 6 6 6 6 6 6 6 10 8 8 8 8 8 8 8 9 10 8 8 11 9 9 9 9 10 10 10 9 8 8 10 11 10 10 11 10 10 8 8 8 8 8 8 10 11 11 8 8 8 8 8 10 15 14 14 15 13 10 10 9 9 9 13 13 10 8 6 6 6 6 6 8 8 9 10 9 9 10 11 8 6 6 6 8 7 8 8 8 8 8 8 8 8 8 9 10 9 10 10 10 8 8 8 8 8 8 10 13 13 10 8 8 8 8 8 8 8 8 8 8 8 10 10 11 8 8 6 6 8 8 8 8 6 6 8 6 6 8 8 9 9 9 9 8 6 6 6 6 6 6 8 8 8 8 6 6 8 10 10 8 8 8 8 10 13 10 9 9 9 9 10 13 15 9 9 9 8 10 12 10 9 9 8 8 8 8 8 8 8 8 8 8 6 6 10 6 11 16 15 10 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 6 6 7 8 10 8 9 8 9 9 9 10 10 9 8 8 6 6 8 8 10 8 8 10 8 8 7 6 8 6 10 8 8 8 8 8 8 10 9 9 9 9 9 8 8 8 8 8 6 6 6 6 8 10 15 11 8 8 6 8 7 6 10 8 10 10 12 12 11 8 10 7 7 6 8 8 8 6 7 6 9 6 7 8 8 6 6 6 7 8 8 11 12 11 8 8 6 6 6 6 8 10 10 10 11 11 11 11 14 11 9 9 9 8 8 6 7 11 8 9 8 9 10 10 9 10 10 10 10 10 10 10 11 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 11 11 8 6 6 6 6 6 11 12 16 8 8 6 7 8 8 12 15 9 8 9 9 8 8 8 8 8 8 8 8 8 8 8 8 9 10 10 10 6 6 6 8 8 8 8 6 6 6 6 7 6 6 6 8 6 10 10 11 10 10 10 10 8 6 6 6 6 8 6 6 6 6 6 8 8 8 8 6 6 8 8 9 10 9 9 9 9 9 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 11 11 11 11 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 9 9 9 9 9 9 8 8 8 8 10 10 8 8 9 10 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 7 6 8 8 9 10 10 11 10 10 8 8 6 6 8 8 10 11 11 10 10 10 10 8 6 6 6 6 6 8 10 7 6 8 6 6 6 8 8 6 6 11 8 6 6 7 8 8 8 8 9 10 10 10 9 8 8 6 6 6 7 12 12 17 8 10 8 8 8 8 8 8 8 8 8 8 8 6 8 8 10 8 8 8 6 7 12 10 8 8 8 6 6 10 8 9 8 8 8 6 6 6 6 8 8 6 7 9 9 12 12 13 8 8 8 8 8 8 8 8 8 6 8 6 7 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 9 10 10 10 8 8 6 6 8 8 8 8 6 6 8 6 6 8 6 6 8 8 8 8 8 8 8 6 6 6 6 6 8 6 6 8 8 10 10 11 9 9 9 8 10 8 8 8 8 8 8 8 8 11 11 11 8 8 6 7 9 9 7 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 12 11 10 9 8 8 10 8 8 8 8 8 8 6 6 8 8 8 8 8 8 10 8 10 11 11 11 11 11 8 8 8 8 6 8 8 8 7 7 7 10 10 9 10 8 8 9 10 15 13 10 3 0 3 8 10 11 11 9 9 8 8 6 6 12 11 10 9 9 9 9 11 11 9 10 9 9 9 6 8 6 6 8 8 8 8 6 6 6 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 10 8 10 8 8 8 10 7 7 6 6 6 6 6 6 7 8 8 10 8 8 8 8 8 8 8 10 8 8 8 8 8 8 6 8 6 6 8 8 8 8 10 8 8 10 10 10 10 8 8 8 8 8 6 9 3 0 3 8 8 8 8 8 7 7 8 8 9 9 10 9 9 8 6 6 6 8 8 9 10 9 10 6 6 8 8 8 8 8 11 10 8 8 8 8 6 8 6 6 10 6 8 8 8 8 8 8 8 8 8 6 6 6 8 6 6 6 6 10 15 8 8 8 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no361_a07.b1 MSMg01no361_a07.b1 CHROMAT_FILE:
MSMg01no361_a07.b1 PHD_FILE: MSMg01no361_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:55 2005
         (526 letters)



>mm_chr4_127951601_127952526
          Length = 926

 Score =  940 bits (486), Expect = 0.0
 Identities = 513/522 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttatgacgtcatttatataaaatcatactcctggttgtgaatgtacagctca 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgttaagaggtcatttatataaaatcatactcctggttgtgaatgtacagctca 264

                                                                       
Query: 65  ttagattgctggcaaaaaaatggccgtcctttgcgaggaggaatgggatgaggaactgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagattgctggcaaaaaaatggccgtcctttgcgaggaggaatgggatgaggaactgtg 324

                                                                       
Query: 125 ggagaggggactgggaggggggatctaacagaacctagatctggaccattccctccttct 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagaggggactgggagggtggatctaacagaacctagatctggaccattccctccttct 384

                                                                       
Query: 185 cagccatgcacgattcactgacagctctcaacccagcttcggctaccacagttccacttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagccatgcacgattcactgacagctctcaacccagcttcggctaccacagttccacttc 444

                                                                       
Query: 245 ccctcactggacagtcagctttcccagagtcccagcaaatgagacttcagtgcaccttcc 304
           |||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 445 ccctcactggacaggcagctttcccagagtcccggcgaatgagacttcagtgcaccttcc 504

                                                                       
Query: 305 gtgttcacagccacagtcacagaccttgcttatgatctgcacttgttcatgcttccactt 364
            ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 atgttcacggccacagtcacagaccttgcttatgatccgcacttgttcatgcttccactt 564

                                                                       
Query: 365 catgagcgtgatccacctcaggacccacacgcatactcctgtgacactcacagtcccctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgagcgtgatccacctcaggacccacacgcatactcctgtgacactcacagtcccctc 624

                                                                       
Query: 425 tgctccctgttaacccttcctcttctgcctcagcctaacttcggccactgagtttaccca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgctccctgttaacccttcctcttctgcctcagcctaacttcggccactgagtttaccca 684

                                                     
Query: 485 catctttgtacttactagcgtggaaaggaattgtgtgtgtgt 526
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catctttgtacttactagcgtggaaaggaattgtgtgtgtgt 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information