BAC Information

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BAC

Clone NameMSMg01-361A11
Chromosome4 (Build37)
Map Location 71,641,541 - 71,843,623
singlet/doubletdoublet
Overlap geneTle1
Upstream geneLOC100039565, LOC100039979, LOC667638, EG667649
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361A11.T7 (MSMg01no361_a11.b1)MSMg01-361A11.TJ (MSMg01no361_a11.g1)
ACCAG470061AG470062
length782765
length of high quality
(start - end)		323 (91 - 413)515 (79 - 593)
definitionCHROMAT_FILE: MSMg01no361_a11.b1 PHD_FILE: MSMg01no361_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:56 2005CHROMAT_FILE: MSMg01no361_a11.g1 PHD_FILE: MSMg01no361_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,843,301 - 71,843,623)(71,641,541 - 71,642,055)
sequence
NTTCTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTCGCGCAAATTAAGGCAGCCCTCAAGTGGGGCCTGACAAGC
TTGTCATTTGCAAATAAATCAAAAGACCATCATTGCAGGAAGGAGACCCA
GTGACTAGAGTTGCTTTGTCATCCTTTGATGAGCCCCACACTCAAGCCTG
TTATTAAAAATGAATGCATTCAAGAGGCTCTGCATTAAGAACATAAACAA
TTAAGGGCACTTGAGCTGGTCTGCTGAGAGCTCCTGAATTGATGGCAGAG
TTTTCTGCATTCTGCCTCCAGAGCCAGAAAATGGGAGCAATTAGTGTTGC
TATCTCCACTCAGGCTGCCCTCACACTTTTTCCCTTTTTTTTTCCTCCTT
CCTTTCTTCCTTTCTGTGAACCCCTCCTTGTTTTTAGAGAGGCTGAGTAT
ACAGATGATCAAGTAAAGCTATTGCTGATCCCAGTGGAAAGGCTCACGTT
CACCAAGTGATACGGACAGAGGTACCGCTTATGTTGGCCATCCCCAGTGA
TTTGTTGCGATCTTCTGTCATGACTGCCTCTCCCCCCATTCTTCCCCTTA
TTATCGTAGCCCTTTGTAGGCACAGGGATTTAGTCTAAGAGGCTTTATTA
ATGGTCACCTTCCCATAATAGCCCTGGGGACACCAACGGGTCTGTTGTTC
CACTTGCTTTCTGCAATATGCCACACGAATCCTCAATATGTCCCCTTGGT
CCCCTTGCCGCCATAAGTCTCTCGCTTACTGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTAAAGTTAGCCCATTGTT
TATTCAGGTTTCTAGACCCTGTCGAGGCCACCATGTTTTCAGATAAAATG
TGGATCATTACATCTTTTTCTTTAAAAACATACTTCAGTTAGGTAAGTTT
GTATATCAGAGTAGATGGTACCTATGGCCTAGTTAGGTATAATTACAAAA
TAATAAAACAAGAAAGAACTTCCTGGTCTGGGCTCAAGGAGGTAAGTCCA
TCAGTAGCTGATAGAGTTGTTAGAATCACAGTGTGATGTTTCTTTCAGAG
CTGCAGAAGAATAACTCCCTAAGCAATGTTATTATCCAGGTTCTAGGATG
GAGGAAAAGTGGGTTGTTTGCTTTCCTTTTCCCAGTTACAAAGTCAGTAG
GCTAGCCTTCCCAAGGAATGATGTGGGGAGGTGTTTGGAGAACATTGAAT
CTAGACTAAGAGAGCCAACTATGCTTTGCTTTCAGGGCAGAGAGGACAGG
AGATCTCAGCAAGATTAGCAGTGGAGTGTTTAAAGAATCAGGTTTAGAAG
TTAGTGGAGGGGAGGGTATGGTCCACTCTTTTGCTCCCTCCGCCCCTCCC
CCTTTTTCTTATTTTCCCCCCACATCTCTCACCCTCCAAATTTTTATCTC
TTCCTCTCCCTTTTTCCCTTTCCCACTCTTCCTCTTTTTTTCCCTTTCCT
ATCCCCTTTTTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_a11.b1 MSMg01no361_a11.b1 CHROMAT_FILE:
MSMg01no361_a11.b1 PHD_FILE: MSMg01no361_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:56 2005
         (323 letters)



>mm_chr4_71843101_71843823
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 322/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgacaagcttgtcatttgcaaataaatcaaaagaccatcattgcaggaaggagaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cctgacaagcttgtcatttgcaaataaatcaaaagaccatcattgcaggaaggagaccca 464

                                                                       
Query: 61  gtgactagagttgctttgtcatcctttgatgagccccacactcaagcctgttattaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gtgactagagttgctttgtcatcctttgatgagccccacactcaagcctgttattaaaaa 404

                                                                       
Query: 121 tgaatgcattcaagaggctctgcattaagaacataaacaattaagggcacttgagctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgaatgcattcaagaggctctgcattaagaacataaacaattaagggcacttgagctggt 344

                                                                       
Query: 181 ctgctgagagctcctgaattgatggcagagttttctgcattctgcctccagagccagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctgctgagagctcctgaattgatggcagagttttctgcattctgcctccagagccagaaa 284

                                                                       
Query: 241 atgggagcaattagtgttgctatctccactcaggctgccctcacactttttccctttttt 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 283 atgggagcaattagtgttgctatctccactcaggcagccctcacactttttccctttttt 224

                                  
Query: 301 tttcctccttcctttcttccttt 323
           |||||||||||||||||||||||
Sbjct: 223 tttcctccttcctttcttccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_a11.g1 MSMg01no361_a11.g1 CHROMAT_FILE:
MSMg01no361_a11.g1 PHD_FILE: MSMg01no361_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:56 2005
         (515 letters)



>mm_chr4_71641341_71642255
          Length = 915

 Score =  996 bits (515), Expect = 0.0
 Identities = 515/515 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtaaagttagcccattgtttattcaggtttctagaccctgtcgaggccaccatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtaaagttagcccattgtttattcaggtttctagaccctgtcgaggccaccatgttt 260

                                                                       
Query: 61  tcagataaaatgtggatcattacatctttttctttaaaaacatacttcagttaggtaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagataaaatgtggatcattacatctttttctttaaaaacatacttcagttaggtaagt 320

                                                                       
Query: 121 ttgtatatcagagtagatggtacctatggcctagttaggtataattacaaaataataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtatatcagagtagatggtacctatggcctagttaggtataattacaaaataataaaa 380

                                                                       
Query: 181 caagaaagaacttcctggtctgggctcaaggaggtaagtccatcagtagctgatagagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagaaagaacttcctggtctgggctcaaggaggtaagtccatcagtagctgatagagtt 440

                                                                       
Query: 241 gttagaatcacagtgtgatgtttctttcagagctgcagaagaataactccctaagcaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttagaatcacagtgtgatgtttctttcagagctgcagaagaataactccctaagcaatg 500

                                                                       
Query: 301 ttattatccaggttctaggatggaggaaaagtgggttgtttgctttccttttcccagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttattatccaggttctaggatggaggaaaagtgggttgtttgctttccttttcccagtta 560

                                                                       
Query: 361 caaagtcagtaggctagccttcccaaggaatgatgtggggaggtgtttggagaacattga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaagtcagtaggctagccttcccaaggaatgatgtggggaggtgtttggagaacattga 620

                                                                       
Query: 421 atctagactaagagagccaactatgctttgctttcagggcagagaggacaggagatctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctagactaagagagccaactatgctttgctttcagggcagagaggacaggagatctca 680

                                              
Query: 481 gcaagattagcagtggagtgtttaaagaatcaggt 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaagattagcagtggagtgtttaaagaatcaggt 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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