Query= MSMg01no361_g09.b1 MSMg01no361_g09.b1 CHROMAT_FILE:
MSMg01no361_g09.b1 PHD_FILE: MSMg01no361_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:26 2005
(442 letters)
>mm_chr4_56153977_56154818
Length = 842
Score = 723 bits (374), Expect = 0.0
Identities = 422/454 (92%), Gaps = 25/454 (5%)
Strand = Plus / Minus
Query: 1 tggcaagtagcaacattcttgaaattcaattggtaagtacattcagatgctcgcagggga 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 tggcaagtagcaacattcttgaaattcaattggtaagcacattcagatgctcgcagggga 398
Query: 61 tgagaagctgtgaatgggggaaaaccacactccctgttttaaaattagccatagaataaa 120
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 397 tgaaaagctgtgaatgggggaaaaccacactctctgttttaaaattagccatagaataaa 338
Query: 121 gtgtaagagtggcttaagctctttgtagttggctgatctacagtgtgtaagagagagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtgtaagagtggcttaagctctttgtagttggctgatctacagtgtgtaagagagagtgg 278
Query: 181 tatctaagaagtgccaccttcctattttctatgctaagagaagaaatgtgatataaatcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 277 tatctaagaagtgccaccttcctattttctatgctaagagaagaaatgtgatataagtcc 218
Query: 241 aaccactgctctctata-------------------------taatgagtagaactgaat 275
||||||||||||||||| ||||||||||||||||||
Sbjct: 217 aaccactgctctctataactttgtttcacggtcataacagtataatgagtagaactgaat 158
Query: 276 cactgaaaagatgcaaactagttgcataggttgcaggacctatcactctcagtggggaac 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cactgaaaagatgcaaactagttgcataggttgcaggacctatcactctcagtggggaac 98
Query: 336 tgcaggcatccctgtgatccaggtggcttttatctcctagaaacccaactagagcacaca 395
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 97 tgcaggcatccctgtgatccaggtggcttttatctcctagaaacccaactggagcaaaca 38
Query: 396 aacaggcaatccaagcagtgaagacaattaaagg 429
||||||||| ||||||||||||||||||||||||
Sbjct: 37 aacaggcaacccaagcagtgaagacaattaaagg 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_g09.g1 MSMg01no361_g09.g1 CHROMAT_FILE:
MSMg01no361_g09.g1 PHD_FILE: MSMg01no361_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:26 2005
(563 letters)
>mm_chr4_55995370_55996332
Length = 963
Score = 1054 bits (545), Expect = 0.0
Identities = 557/561 (99%), Gaps = 1/561 (0%)
Strand = Plus / Plus
Query: 1 agaccaatctcactgatgaatattgattcaaaaatactcaataattctcttgcaaaatat 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 202 agaccaatctcactgatgaatattgattcaaaa-tactcaataattctcttgcaaaatat 260
Query: 61 ctcactttaagaatcatgtcattcaagtttatcgtagtctttctaaatatttctcatatg 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ctcactttaagaatcatgtcattcaagtttatcgtcgtctttctaaatatttctcatatg 320
Query: 121 ttcttacccctgttgcattttctccatatggaatgatttccatgtcctctttttacagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttacccctgttgcattttctccatatggaatgatttccatgtcctctttttacagat 380
Query: 181 ctaaatttttccttctaaatgccacttctaccagacacttcaagacactttgcttttttt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaatttttcctcctaaatgccacttctaccagacacttcaagacactttgcttttttt 440
Query: 241 ctttctttctgtgaataataatattgccagcattcaagcttccatggctctctactgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttctttctgtgaataataatattgccagcattcaagcttccatggctctctactgtca 500
Query: 301 tctcagatagctaatgttggctgtctattgcataatggcaattcaagtctttattatccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcagatagctaatgttggctgtctattgcataatggcaattcaagtctttattatccc 560
Query: 361 aatgttcccgctttatctacatctttgggctataaattcaatatcatgtctctctttgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgttcccgctttatctacatctttgggctataaattcaatatcatgtctctctttgat 620
Query: 421 ttctctctatttctcttggaatgttttcaagaacaggtttttgtcctgaatctaaactca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctctctatttctcttggaatgttttcaagaacaggtttttgtcctgaatctaaactca 680
Query: 481 atgttggatgaaacacagggcccccaatggaggagctagagggatctgcaatcctatagg 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgttggatggaacacagggcccccaatggaggagctagagggatctgcaatcctatagg 740
Query: 541 tggaacaacaatatgaactaa 561
|||||||||||||||||||||
Sbjct: 741 tggaacaacaatatgaactaa 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
