NAAATCTAGTCCTCGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACAT
AGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAA
CCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACA
AGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGG
CGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAAT
CTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCA
TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAA
AGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCATTTCT
TCAACGAATTGGAAGGAGCAATATGCAAATTTGTCTGGAATAACAN

NNNCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTGTTTTTCTTAAGGAGG
CTTGCTGCTTTGATACACATTTTATGTAGAACACAGGAACACTAAAAAGA
ATTTTTACATCATTTAAAAATGTATAATTTGCTTATATATTCATGTAAGT
TCATTTACTAAAATAAAATGCTGTTTAACAAAGCAGTTCTACTTTTTCTT
TATCTACTTTAAAGAGGGAAGATGCACACACTCTTCTGATTGTCTGTTCT
TTAGATAGTTCAGCCCAAAGTTTATCCATGGGAAAGTGATCTCTTTAGAC
TGACTGTCCTTGGCCTAAATACCAGTTCCCAGGAGTGGTAGGGAATATTG
AAAAACAAATTCTACAGGCTCTGGGCCAGCTGGAAAACTTGGTACAGAGA
AACACAACCCAAAACAGGATTTCCGAAGGTAGCATGTAGCAGTGAATTGA
AGCAGAACTCCTGGACCATATGAAGTCAAAAGTCAGAGTCCTAGTATCCT
AAGAACTCAAATATAGAGCAGGTACTATTTCTGGTTGGATCTTAGCTATG
ATCTTTCTTCACAAGATCCTGGGGTGGTCAGAAGTTCCCATAGTTCCCTC
CTTCAGGTCAGTAACAATGAAATAATGGTTTGTTTAAGCTACAAAAAACC
TCCGGGAGGGGTTCTCCGAAGGGGGTTTCCCCCAACTTGGTTTGCCCCAT
TGAAAGGTGG

Query= MSMg01no361_h05.g1 MSMg01no361_h05.g1 CHROMAT_FILE:
MSMg01no361_h05.g1 PHD_FILE: MSMg01no361_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:30 2005
         (507 letters)



>mm_chr4_89321136_89322041
          Length = 906

 Score =  973 bits (503), Expect = 0.0
 Identities = 506/507 (99%), Gaps = 1/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtgtttttcttaaggaggcttgctgctttgatacacattttatgtagaacacaggaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtgtttt-cttaaggaggcttgctgctttgatacacattttatgtagaacacaggaa 259

                                                                       
Query: 61  cactaaaaagaatttttacatcatttaaaaatgtataatttgcttatatattcatgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cactaaaaagaatttttacatcatttaaaaatgtataatttgcttatatattcatgtaag 319

                                                                       
Query: 121 ttcatttactaaaataaaatgctgtttaacaaagcagttctactttttctttatctactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcatttactaaaataaaatgctgtttaacaaagcagttctactttttctttatctactt 379

                                                                       
Query: 181 taaagagggaagatgcacacactcttctgattgtctgttctttagatagttcagcccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaagagggaagatgcacacactcttctgattgtctgttctttagatagttcagcccaaa 439

                                                                       
Query: 241 gtttatccatgggaaagtgatctctttagactgactgtccttggcctaaataccagttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtttatccatgggaaagtgatctctttagactgactgtccttggcctaaataccagttcc 499

                                                                       
Query: 301 caggagtggtagggaatattgaaaaacaaattctacaggctctgggccagctggaaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caggagtggtagggaatattgaaaaacaaattctacaggctctgggccagctggaaaact 559

                                                                       
Query: 361 tggtacagagaaacacaacccaaaacaggatttccgaaggtagcatgtagcagtgaattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggtacagagaaacacaacccaaaacaggatttccgaaggtagcatgtagcagtgaattg 619

                                                                       
Query: 421 aagcagaactcctggaccatatgaagtcaaaagtcagagtcctagtatcctaagaactca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagcagaactcctggaccatatgaagtcaaaagtcagagtcctagtatcctaagaactca 679

                                      
Query: 481 aatatagagcaggtactatttctggtt 507
           |||||||||||||||||||||||||||
Sbjct: 680 aatatagagcaggtactatttctggtt 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space:   445312
Effective search space used:   445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)