BAC Information

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BAC

Clone NameMSMg01-361J05
Chromosome4 (Build37)
Map Location 82,930,088 - 83,101,549
singlet/doubletdoublet
Overlap gene1810054D07Rik, Snapc3
Upstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985
Downstream genePsip1, LOC100040611, 4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361J05.T7 (MSMg01no361_j05.b1)MSMg01-361J05.TJ (MSMg01no361_j05.g1)
ACCAG470471AG470472
length749758
length of high quality
(start - end)		641 (70 - 710)545 (81 - 625)
definitionCHROMAT_FILE: MSMg01no361_j05.b1 PHD_FILE: MSMg01no361_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:39 2005CHROMAT_FILE: MSMg01no361_j05.g1 PHD_FILE: MSMg01no361_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,930,088 - 82,930,728)(83,101,005 - 83,101,549)
sequence
NGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGATTTCCCAAGTGGGGCAAGATGACTCAGGACAGATGTTC
TGAGTTCAGGATCTGCGTCACACGGACACACAAGTCAGCAGTGATTCCAG
TGCACAACTTAAAAATGCCGTGAGGCAGAGCTCACTTTCTGGGGGCTCAC
AGTCGCTCTGATCTGCTGAGAAGGCTAGCTGAAGCCAATATCACCCAGGA
GGAGCTGAAGGTCTAGGATAAAGGGCACAAGCTATTTCTGAATGAACATC
ACTTTATTCATCTTTAAAGTCTTAATTAACATAGCAAGATAAAATGCTAG
GAAGAAGGCAGCAGAGGACCTAAGACAAACACAAGTGAGCCTCCTCCTGC
TGCCATTGTTTTGCAGTGGGAGTCTCGGGAGCCCCAGGGCACACCTTGCA
GCAGCGGTCAGCCAGCCATGGTCAGCCCGCCAGGGCACCGGGAGAGACCA
CAGCCTCTGCGGCTCCGGCAGGCGCACAGACACAGACGTGCATGCGGCTT
TCTGCAATTACAGCTCTCGCCCTCGGGAAGAGTCAAAAAGGGAGGGGGCG
TGGGAAGACCCGGCAAGCCTGGCAGGAAGCTGCTAAGAGGACAATGTCAT
CTAACAAAACCTGAAGGTCTCTAATGAAACAGAACTCTTTAATTTATTTC
CCCAAAGCTTTCCGTACATAAATCCTCACAGACTTAGAGAGGACCTTGC

NNCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGATTTCCTGCTAAGGAAG
TAGTAGTGTTCTCCTTAGCTGTCACTGAGACCCTGCTAGGAGATGCAGGA
GCTATGCAGTAGGAAGCTCAGGAGAGAACTGCCACTTGCCTTGTGTTGAC
TTCCCTTTCTTCCTAGCCACAGGTGTTAAGTTATAGAACATCCAACTTCA
GAACATTAATGGCACTCCTAAGTTATGGGATGCTGCCTTGCTCTGACCAT
GTATGTTCATTTTGAAGCACAGCTGCTTTTTTTAATTTGGAATACTCTGT
CTATAAGGCTAATTCACAGACAAGCTATCACTCTCAAAACTCTGATAACA
ACAATGGCTGACCTAAGAGATCTAGTGAATGATAGCCACCTCTCCCACTG
TGAATAGAGTATGCATGTATAATGTGCATGTATGGATACCTACTTTGATT
TCTCAGCTGCTTGGATCAACTTCAGATATCCCCCTAATGAGAAAATCTGG
TTGTAAGCTTGTATGTATAAACAATTCGGCCAGAGCTCATCTGACCACAT
TTGCTATTCTAGTTAGGAAGTTACCCAGGCTGTGATGCGATACACTAAAA
ATGTTCCTACTCATATCAACTTACCTGAGTAGAGATGCCAGGTAAGGGCC
AGTCCGCCATCCTGTATGCAGAACGACGGCGCCACGGATGAGTTTTATTT
CCTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_j05.b1 MSMg01no361_j05.b1 CHROMAT_FILE:
MSMg01no361_j05.b1 PHD_FILE: MSMg01no361_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:39 2005
         (641 letters)



>mm_chr4_82929888_82930928
          Length = 1041

 Score = 1170 bits (605), Expect = 0.0
 Identities = 632/641 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggggcaagatgactcaggacagatgttctgagttcaggatctgcgtcacacggacac 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggggcacgatgactcaggacagatgttctgagttcaggatctgcgtcacacggacac 260

                                                                       
Query: 61  acaagtcagcagtgattccagtgcacaacttaaaaatgccgtgaggcagagctcactttc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgagtcagcagtgattccagtgcacaacttaaaaatgccgtgaggcagagctcactttc 320

                                                                       
Query: 121 tgggggctcacagtcgctctgatctgctgagaaggctagctgaagccaatatcacccagg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tgggggctcacagtcgctctgatctgctgagaagactagctgaagccaatatcacccagg 380

                                                                       
Query: 181 aggagctgaaggtctaggataaagggcacaagctatttctgaatgaacatcactttattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagctgaaggtctaggataaagggcacaagctatttctgaatgaacatcactttattc 440

                                                                       
Query: 241 atctttaaagtcttaattaacatagcaagataaaatgctaggaagaaggcagcagaggac 300
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 atctttaaagccttaattaacatagcaagataaaatgctaagaagaaggcagcagaggac 500

                                                                       
Query: 301 ctaagacaaacacaagtgagcctcctcctgctgccattgttttgcagtgggagtctcggg 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ctaagacaaacacaagtgagcctcctcctgctgccattgttctgcagtgggagtctcggg 560

                                                                       
Query: 361 agccccagggcacaccttgcagcagcggtcagccagccatggtcagcccgccagggcacc 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 agccccagggcacaccttgcagcagccgtcagccagccatggtcagcccgccagggcacc 620

                                                                       
Query: 421 gggagagaccacagcctctgcggctccggcaggcgcacagacacagacgtgcatgcggct 480
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 621 gggagagaccacagcctctgcggctcaggcaggcgcacagacacaggcgtgcatgcggct 680

                                                                       
Query: 481 ttctgcaattacagctctcgccctcgggaagagtcaaaaagggagggggcgtgggaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctgcaattacagctctcgccctcgggaagagtcaaaaagggagggggcgtgggaagac 740

                                                                       
Query: 541 ccggcaagcctggcaggaagctgctaagaggacaatgtcatctaacaaaacctgaaggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccggcaagcctggcaggaagctgctaagaggacaatgtcatctaacaaaacctgaaggtc 800

                                                    
Query: 601 tctaatgaaacagaactctttaatttatttccccaaagctt 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctaatgaaacagaactctttaatttatttccccaaagctt 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_j05.g1 MSMg01no361_j05.g1 CHROMAT_FILE:
MSMg01no361_j05.g1 PHD_FILE: MSMg01no361_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:39 2005
         (545 letters)



>mm_chr4_83100805_83101749
          Length = 945

 Score = 1054 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatttcctgctaaggaagtagtagtgttctccttagctgtcactgagaccctgctagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tggatttcctgctaaggaagtagtagtgttctccttagctgtcactgagaccctgctagg 686

                                                                       
Query: 61  agatgcaggagctatgcagtaggaagctcaggagagaactgccacttgccttgtgttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agatgcaggagctatgcagtaggaagctcaggagagaactgccacttgccttgtgttgac 626

                                                                       
Query: 121 ttccctttcttcctagccacaggtgttaagttatagaacatccaacttcagaacattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttccctttcttcctagccacaggtgttaagttatagaacatccaacttcagaacattaat 566

                                                                       
Query: 181 ggcactcctaagttatgggatgctgccttgctctgaccatgtatgttcattttgaagcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcactcctaagttatgggatgctgccttgctctgaccatgtatgttcattttgaagcac 506

                                                                       
Query: 241 agctgctttttttaatttggaatactctgtctataaggctaattcacagacaagctatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctgctttttttaatttggaatactctgtctataaggctaattcacagacaagctatca 446

                                                                       
Query: 301 ctctcaaaactctgataacaacaatggctgacctaagagatctagtgaatgatagccacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctcaaaactctgataacaacaatggctgacctaagagatctagtgaatgatagccacc 386

                                                                       
Query: 361 tctcccactgtgaatagagtatgcatgtataatgtgcatgtatggatacctactttgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcccactgtgaatagagtatgcatgtataatgtgcatgtatggatacctactttgatt 326

                                                                       
Query: 421 tctcagctgcttggatcaacttcagatatccccctaatgagaaaatctggttgtaagctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcagctgcttggatcaacttcagatatccccctaatgagaaaatctggttgtaagctt 266

                                                                       
Query: 481 gtatgtataaacaattcggccagagctcatctgaccacatttgctattctagttaggaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtatgtataaacaattcggccagagctcatctgaccacatttgctattctagttaggaag 206

                
Query: 541 ttacc 545
           |||||
Sbjct: 205 ttacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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