Query= MSMg01no362_n03.b1 MSMg01no362_n03.b1 CHROMAT_FILE:
MSMg01no362_n03.b1 PHD_FILE: MSMg01no362_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:19 2005
(489 letters)
>mm_chr4_102734893_102735781
Length = 889
Score = 932 bits (482), Expect = 0.0
Identities = 485/486 (99%)
Strand = Plus / Minus
Query: 4 ggaattcatcatcagtcgcttgtctctttgtccacagagtgattgggcagaggaaaggat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ggaattcatcatcagtcgcttgtctctttgtccacagagtgattgggcagaggaaaggat 630
Query: 64 ttagtcttggcatgatagagttgtaaaaagaagtagcttagagagttttggaggattatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttagtcttggcatgatagagttgtaaaaagaagtagcttagagagttttggaggattatt 570
Query: 124 ttcctatctgctctgtagaaataatgacataatccaagtttctaaaacaaatgccagaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttcctatctgctctgtagaaataatgacataatccaagtttctaaaacaaatgccagaag 510
Query: 184 atcgaaaggcatgatctgtttgtagctccttatgtgtctatgtcaggaggaaaacgcata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 509 atcgaaaggcatgatctgtttgtagctccttatgtgtctatgtcaggaggaaaacacata 450
Query: 244 ctggtcacactaatccctgctagaggatgaccccagtgtgacaactgatgcagaagtcta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctggtcacactaatccctgctagaggatgaccccagtgtgacaactgatgcagaagtcta 390
Query: 304 tgatgtgtttataaagccagtgaggaccaaggttttatattaagtacgggaagtgactat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgatgtgtttataaagccagtgaggaccaaggttttatattaagtacgggaagtgactat 330
Query: 364 ttgaagatttgttttcatgtgccctagaagctatggattggagtaactgaaggcagatta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttgaagatttgttttcatgtgccctagaagctatggattggagtaactgaaggcagatta 270
Query: 424 acttcttacatcctcaccagcacgcacaagacagtctcagctgccatcatagtctgccct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acttcttacatcctcaccagcacgcacaagacagtctcagctgccatcatagtctgccct 210
Query: 484 actgca 489
||||||
Sbjct: 209 actgca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_n03.g1 MSMg01no362_n03.g1 CHROMAT_FILE:
MSMg01no362_n03.g1 PHD_FILE: MSMg01no362_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:19 2005
(537 letters)
>mm_chr4_102504625_102505560
Length = 936
Score = 969 bits (501), Expect = 0.0
Identities = 528/537 (98%), Gaps = 1/537 (0%)
Strand = Plus / Plus
Query: 1 ttaattcttgactagatggttttaaggatcccaaaacctaatcttcattctttaaccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaattcttgactagatggttttaaggatcccaaaacctaatcttcattctttaaccaat 260
Query: 61 cttcattattaaaattagatttaactgggtagatgtttctctaaagtttgtatttgcttc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcattattaaaattagatt-aactgggtagatgtttctctaaagtttgtatttgcttc 319
Query: 121 ccaggaacctacaggctgaattacacatcactatagtgacataaagaagctcttgacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 ccaggaacctacaggctgaattacacatcactatagtgacataaagaagctcttgacgtc 379
Query: 181 taatctttaccaagctttgctgccttatctcctgtcactgtctccttgtaatttaataag 240
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 380 taatctttaccaagctttgctgcattatcgcctgtcactgtctccttgtaatttaataag 439
Query: 241 aaatagcaaattgctttttctatatataccatccagttcattgcgtgtgtgtgagactta 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 aaatagcaaattgctttttctatatataccatccagttcattgtgtgtgtgtgagactta 499
Query: 301 ggaagaaattctcttacaacctatagctctgtatcagtagttccccagcacaaaccctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggaagaaattctcttacaacctatagctctgtatcagtagttccccagcacaaaccctgt 559
Query: 361 atgcagtgttcctacgctcaagaccctgagcctcgaaattgccttgcccacaggaaagag 420
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 atgcagtgttcctaagctcaagaccctgagcctcgcaattgccttgcccacaggaaagag 619
Query: 421 agacagacagacatgaggagatgtcagaaaataaatcagagctaccacattccccagaca 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agacagacagacatggggagatgtcagaaaataaatcagagctaccacattccccagaca 679
Query: 481 tctccatgaagaatcataatgtggatttgtttttgacctgactacttgaattaaagg 537
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctccatgaagaatcgtaatgtggatttgtttttgacctgactacttgaattaaagg 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
