Query= MSMg01no363_c03.b1 MSMg01no363_c03.b1 CHROMAT_FILE:
MSMg01no363_c03.b1 PHD_FILE: MSMg01no363_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:45 2005
(494 letters)
>mm_chr4_75522744_75523631
Length = 888
Score = 899 bits (465), Expect = 0.0
Identities = 483/491 (98%), Gaps = 6/491 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactcacatttacgcagttgtctttcttgggaaaaattatttccttctcagttt 63
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggaattcactcacatttatg-agttgtctttcttgggaaaaattatttccttctcagttt 428
Query: 64 ccccatcttgtacctcagagaaagtaagaagaaaggaaaacagacctcatggaggaccca 123
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 427 ccccatcttgtacctcagagaaagtaagaagaaaggaaaacagacctc----aggaccta 372
Query: 124 gcagcagcttccaacctgaaggcctttgggaagagggcacagtttcacctggagtgtgca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gcagcagcttccaacctgaaggcctttgggaagagggcacagtttcacctggagtgtgca 312
Query: 184 ttgaaaatggagattcctgcagtctctccaaatgtactagctttgaggatctaagtttca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttgaaaatggagattcctgcagtctctccaaatgtactagctttgaggatctaagtttca 252
Query: 244 gactcctccaggagattgtttggttgttgttgtttgttttctcttatcctcttgagacag 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 251 gactcctccaggagattgtttggttgttgttgtttgttttc-cttatcctcttgagacag 193
Query: 304 ggtctcataaagcatgggttgctcttgacctttctgttccaactgaagataaccttgaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtctcataaagcatgggttgctcttgacctttctgttccaactgaagataaccttgaac 133
Query: 364 ttctgatctgcctgcttctatcaccgaagtgcagagatcagaagtgtgtatcaccatgtc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ttctgatctgcctgcttctatcaccgaagtgcagagatcagaagtgtgtatcaccatgtc 73
Query: 424 tgctttatccaagtgatttttaaacctgtaatttgagaattgcactaccaaggaaatttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tgctttatccaagtgatttttaaacctgtaatttgagaattgcactaccaaggaaatttg 13
Query: 484 acatcttaaga 494
|||||||||||
Sbjct: 12 acatcttaaga 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 888
Length adjustment: 10
Effective length of query: 484
Effective length of database: 878
Effective search space: 424952
Effective search space used: 424952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_c03.g1 MSMg01no363_c03.g1 CHROMAT_FILE:
MSMg01no363_c03.g1 PHD_FILE: MSMg01no363_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:45 2005
(552 letters)
>mm_chr4_75374279_75375230
Length = 952
Score = 1052 bits (544), Expect = 0.0
Identities = 550/552 (99%)
Strand = Plus / Plus
Query: 1 caacctaagccaacagagtggcaaattgtagacccaaagagaaggactgctgagtccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacctaagccaacagagtggcaaattgtagacccaaagagaaggactgctgagtccagc 260
Query: 61 tgtgaaatttcacacaaggaaagaattcacatatttcttaaatgacaataaaccagggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaaatttcacacaaggaaagaattcacatatttcttaaatgacaataaaccagggag 320
Query: 121 atagaagatagattcccgagcctctgcaaatgctctaactgctacatgaggacttgaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaagatagattcccgagcctctgcaaatgctctaactgctacatgaggacttgaggc 380
Query: 181 attccctcttataagtgcagacatcaagctagcaatccattcagcatgaaaacacgctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attccctcttataagtgcagacatcaagctagcaatccattcagcatgaaaacacgctaa 440
Query: 241 caagtatattacactcccagaactgttttcaaaacataaaatgaaggggctgagattgtg 300
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagcagattacactcccagaactgttttcaaaacataaaatgaaggggctgagattgtg 500
Query: 301 tggtggctcacattgaagcattccaaatctgcttctataaatatctttcaagtgctgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtggctcacattgaagcattccaaatctgcttctataaatatctttcaagtgctgtgt 560
Query: 361 gccaaggcatttataagtcatttcacatctattacctaaggtgatagtcagtgcaactgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccaaggcatttataagtcatttcacatctattacctaaggtgatagtcagtgcaactgt 620
Query: 421 aagcaagttcaagaatggctcaaataaaacagttcctaatggtgtgtcaggtcataaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcaagttcaagaatggctcaaataaaacagttcctaatggtgtgtcaggtcataaatt 680
Query: 481 ttacagtgatgtcaatgcagttaaaagattatatgcaatgatagacaatggaaaccgcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttacagtgatgtcaatgcagttaaaagattatatgcaatgatagacaatggaaaccgcat 740
Query: 541 tgagtaactata 552
||||||||||||
Sbjct: 741 tgagtaactata 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
