ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATGTGATTTCTGTGACTCTAGGACATTTTTATCTGTGAGACAAAAAT
ATAGGCAGTAGTTTGTATATATGTGAAACATGGAGATAAAGAAACTTTAA
TGTTACCTTTACATTTTACTTTGAACACAAAACAATTCTAAAATACTTTT
CACTCATTTAAAAATATGCATGACTTTTCCTTAAATGCTAAATAAACAAA
TATTGCATGGGAATTATCTATTATAAATTTGAAATTTGACTCTATTCTCA
GTGATATAAACACTCAGAAGGCTAAATCATTCAGAATCTATAGTATCTTT
AGTATTATAGTCTGCTAAAACAATAAAATGCATAATGATTCCGAACTAAA
TATGTTTGTTATAGGTCTATTTTTTCTTCAAAGCAATATTTCACTTATTT
TATAAGTAGTTTAAACAAAATAGAAGAGATACCTGTATAAATTATAAACA
CTATAGATTGAAATTTTTCTTTCTTTAATATATACTGAGTAGATAATCAT
TTTTCATATAATCTATGCTTGAATTCATATGCAAGTAATGGATTTCTATG
TGACCTTCTAAAAGAGGTTCATAGAGCAAAACTTACTGAAAGATAAGTCA
TAGAACACACATAAATATATGTGTGATAGAATCACATGGTACAGGATATC
CTAGAAATTACTTTGTGCCTATGCA

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAACAGAGGAATCCAGAATGGC
TGAGAAGCACCTAAAGAAATGTTCAAAGGTCTTAGTGATCAGAGAAATGC
AAATCAAAATGACCCTGAGATTCAGCCTTACACCAATCAGAATGGCTAAG
ATTAAAAACTCAGGTGACAGCAGATGCTGGTGAAGAGGTTAGGGGGTTGA
GGATATCTTCTTTGAGACAAGGGGGTGGGGAGGAGGAATGGATTGTGGGG
TTGNNCNNNNNCCCCCCCCTTTTTTTTTTTCCCCNNNNNNCCNCCNCCCC
CCCCCCCCCCCCCTTTTTCCCCCCCCCCCCCCCNCGCNNCNNCNCNNCCG
CCCCNCCNCNNCGCCCCCCCGGCNCCCGNCGTTTTCTCGTCTTTTCTGTT
TCTTTTTTGTGTGTGTCGGGGTTGTTTTTTGGTTCTTTTCTCTCTTTTGC
CTTTTCTTTTTTTCTTTTCGCGTTGTTGTTTTTTTTTCCGTTTTTTGTCG
CTCTTTTGTGTTCGTGTTCTTTCTGCTTCTTTCTGTTCCCTGTGTTTTGT
TGTTTCTTTTTTCTTGGCGTGTTTGTTTCTGTCTTGTGTNTTTTCTCCTT
TTTCTTTCCCTCTCTTCGATGCCGTCTTTTTTTTTGTTTTTTTTTCCCGC
TTGTCTTTCTTCCGTTCTTGCTGTTTCTGTCTCCCCCTTCCCCTCGCCGC
CGCGCCCTTTTGCTCTGTTTCTTTCTTCTTCGTCTCTTTT

Query= MSMg01no363_m02.b1 MSMg01no363_m02.b1 CHROMAT_FILE:
MSMg01no363_m02.b1 PHD_FILE: MSMg01no363_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:34 2005
         (677 letters)



>mm_chr4_79422075_79423149
          Length = 1075

 Score =  977 bits (505), Expect = 0.0
 Identities = 575/619 (92%), Gaps = 35/619 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgtgatttctgtgactctaggacatttttatctgtgagacaaaaatatagg 63
           |||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct: 617 ggaattcaatgtgaattctgtgactataggacacttttatctgtgagac-aaaatatagg 559

                                                                       
Query: 64  cagtagtttgtatatatgtgaaacatggagataaagaaactttaatgttacctttacatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagtagtttgtatatatgtgaaacatggagataaagaaactttaatgttacctttacatt 499

                                                                       
Query: 124 ttactttgaacacaaaacaattctaaaatacttttcactcatttaaaaatatgcatgact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttactttgaacacaaaacaattctaaaatacttttcactcatttaaaaatatgcatgact 439

                                                                       
Query: 184 tttccttaaatgctaaataaacaaatattgcatgggaattatctattataaatttgaaat 243
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 438 tttccttaaatgctagataaacaaatattgcatgggaattatctattataaatttaaaat 379

                                                                       
Query: 244 ttgactctattctcagtgatataaacactcagaaggctaaatcattcagaatctatagta 303
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgactctattcttagtgatataaacactcagaaggctaaatcattcagaatctatagta 319

                                                                       
Query: 304 tctttagtattatagtctgctaaaacaataaaatgcataatgattccgaactaaatatgt 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 318 tctttagtattatagtctgctaaaacaat-aaatgcataatgattccgaactaaatatgt 260

                                                                       
Query: 364 ttgttataggtctattttttcttcaaagcaatatttcacttattttataagtag------ 417
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 259 ttgttataagtctattttttcttcaaagcaatatttcacttattttataagtagttcaaa 200

                                                                       
Query: 418 ----------------ttta-----------aacaaaatagaagagatacctgtataaat 450
                           ||||           ||| ||||||||||||||| |||||||||
Sbjct: 199 gcaatatttcacttattttataagtagtttgaacgaaatagaagagatacttgtataaat 140

                                                                       
Query: 451 tataaacactatagattgaaatttttctttctttaatatatactgagtagataatcattt 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tataaacactatagattgaaatttttctttctttaatatatactgagtagataatcattt 80

                                                                       
Query: 511 ttcatataatctatgcttgaattcatatgcaagtaatggatttctatgtgaccttctaaa 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ttcatataatctatgcttgaattcatatgcaagtaatggatttctatgtgaccttctaaa 20

                              
Query: 571 agaggttcatagagcaaaa 589
           |||||||||||||||||||
Sbjct: 19  agaggttcatagagcaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1075
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1065
Effective search space:   710355
Effective search space used:   710355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)