BAC Information

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BAC

Clone NameMSMg01-365E11
Chromosome4 (Build37)
Map Location 123,043,290 - 123,244,350
singlet/doubletdoublet
Overlap geneMacf1, D830031N03Rik
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365E11.T7 (MSMg01no365_e11.b1)MSMg01-365E11.TJ (MSMg01no365_e11.g1)
ACCAG473273AG473274
length777734
length of high quality
(start - end)		491 (59 - 549)514 (56 - 569)
definitionCHROMAT_FILE: MSMg01no365_e11.b1 PHD_FILE: MSMg01no365_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:44 2005CHROMAT_FILE: MSMg01no365_e11.g1 PHD_FILE: MSMg01no365_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,244,210 - 123,244,350)(123,043,290 - 123,043,803)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATTTTTCTCTGTGTCCTCATGATAGTCCTTAAGAGTTTTCAAAAATACTG
AAGATGGCTCAGCAAGTGAAGGCGCTTGCCATGCACATCTGGGGACCCCA
GAGGTCCTCAGAGCTCATGTAATGGTGGAAGGCAGAGGAAGGTGATGCTC
TATGAGCTCAAGGCCAGCCTGGTCTACATAGAGAGTTCCAGGCCATCAGG
ACTACATAGTAAGAAACTGTCTCTAAAAACAAACAAACAAACAAACAAAC
AAACAAACAAACTATCAAACAAACAAACAAACATAACAGAAGACTATACG
GTATCATACAAAAAGTTAGTGATTATGAGCCATTGTCTCACAAGAGAGGA
CCCTTTTTTATATAGTCTTAATATTGAATCATTTTGGTGTTGTAGAAAAT
AATTATATTGGCTCAGTTTTCTGTACTGTTACAAGAAAGCCAGCAAGTGT
AAATCTTCACACGATCCCTAATCACATGTGGAAGTTTTGCCCTGAATGAG
GCTTTGTGAAATCTACTGGTAGCAGTTGGAAGTCACGTTTCTCTGTCTTT
AGCATGAGAATGGCCCTGTTTCCACACCAGCTTGAGTCCTTCTGATGATT
TAGCTGAACGGCCCTAACTAAGTTCCCCACCCCTTTTTCATTTCTGGGGG
TTTTTGTCCTCTTTTTGCACCTAAAAATTTGCCAATAAAAAAACCCATTC
CTGGTGTCCCGTCATTTCTTTGCCCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACCCCTTTATGCTGCATCTGAAGTCCCTCCATGGATTGCACAGTA
CCGCAAACCTAAGTATGAGAGTTGGACCCATGCTCGAGACCAAGCTAGAA
CTCAGTAGTCAAAGGCCCCCTAGAGCTTGCTGAAACAGCATCCGAAGGCT
AACCTGAAACATTAACTCTAAGTGATTGCTTCCCAAGATGATTCACATGT
CTACATTCAGGACGGTATAAAGCTAAGGTCAAAATACTCTAAATTCTCCA
TACCTCATCTTCAATCTTATCTGCATCAGTTGTTGGCCGATAGGCATCCT
TGTTGGGATGTAAGGCAGCCACAAATTCATAGTAGTCAATGTAGCCATCC
CCATCTCTGTCAAAAATGTCGGCCACAGCTGTCATCTCTAACTTGGTGGT
TGGGAACTCTGGGGAGAAGAGAACATGATTTGAAACATTGAAATACTACA
AAGTGTGGAGCAGACTCAAGGAAAGGCCATCCAGAGACTGCCCCACCTGA
GGAGCCATCCCATATACAGTTACCAAACCCAGACACTATTGTGGATGCCA
AGAAATACATGCTGACAGGAGCCTGATATATCTGTCTCTTGAGAGGCCAA
AACGAAGGAGGATGCTTGTACCCACCTGGATACTGAGCATAAGGGCCCCA
TGGGGGGAGTCCAAAAAAGGACTGAAGGGCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_e11.b1 MSMg01no365_e11.b1 CHROMAT_FILE:
MSMg01no365_e11.b1 PHD_FILE: MSMg01no365_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:44 2005
         (491 letters)



>mm_chr4_123243660_123244550
          Length = 891

 Score =  242 bits (125), Expect = 5e-68
 Identities = 137/141 (97%)
 Strand = Plus / Minus

                                                                       
Query: 351 tatatagtcttaatattgaatcattttggtgttgtagaaaataattatattggctcagtt 410
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 691 tatatagtcttaatattgaatcattttggtgttttagaaaataattatattggctcagtt 632

                                                                       
Query: 411 ttctgtactgttacaagaaagccagcaagtgtaaatcttcacacgatccctaatcacatg 470
           ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 631 ttctgtactgttataagaaagccagcaagtgtaaatcttcataagatccctaatcacatg 572

                                
Query: 471 tggaagttttgccctgaatga 491
           |||||||||||||||||||||
Sbjct: 571 tggaagttttgccctgaatga 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_e11.g1 MSMg01no365_e11.g1 CHROMAT_FILE:
MSMg01no365_e11.g1 PHD_FILE: MSMg01no365_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:44 2005
         (514 letters)



>mm_chr4_123043090_123044003
          Length = 914

 Score =  986 bits (510), Expect = 0.0
 Identities = 513/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccctttatgctgcatctgaagtccctccatggattgcacagtaccgcaaacctaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccctttatgctgcatctgaagtccctccatggattgcacagtaccgcaaacctaagta 260

                                                                       
Query: 61  tgagagttggacccatgctcgagaccaagctagaactcagtagtcaaaggccccctagag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagagttggacccatgctcaagaccaagctagaactcagtagtcaaaggccccctagag 320

                                                                       
Query: 121 cttgctgaaacagcatccgaaggctaacctgaaacattaactctaagtgattgcttccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgctgaaacagcatccgaaggctaacctgaaacattaactctaagtgattgcttccca 380

                                                                       
Query: 181 agatgattcacatgtctacattcaggacggtataaagctaaggtcaaaatactctaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgattcacatgtctacattcaggacggtataaagctaaggtcaaaatactctaaatt 440

                                                                       
Query: 241 ctccatacctcatcttcaatcttatctgcatcagttgttggccgataggcatccttgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccatacctcatcttcaatcttatctgcatcagttgttggccgataggcatccttgttg 500

                                                                       
Query: 301 ggatgtaaggcagccacaaattcatagtagtcaatgtagccatccccatctctgtcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgtaaggcagccacaaattcatagtagtcaatgtagccatccccatctctgtcaaaa 560

                                                                       
Query: 361 atgtcggccacagctgtcatctctaacttggtggttgggaactctggggagaagagaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtcggccacagctgtcatctctaacttggtggttgggaactctggggagaagagaaca 620

                                                                       
Query: 421 tgatttgaaacattgaaatactacaaagtgtggagcagactcaaggaaaggccatccaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatttgaaacattgaaatactacaaagtgtggagcagactcaaggaaaggccatccaga 680

                                             
Query: 481 gactgccccacctgaggagccatcccatatacag 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 gactgccccacctgaggagccatcccatatacag 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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