Query= MSMg01no365_j08.b1 MSMg01no365_j08.b1 CHROMAT_FILE:
MSMg01no365_j08.b1 PHD_FILE: MSMg01no365_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:07 2005
(551 letters)
>mm_chr4_46211771_46212721
Length = 951
Score = 961 bits (497), Expect = 0.0
Identities = 533/547 (97%), Gaps = 4/547 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaatctccagcaaccacatgatagctcacaaccatcagtacagctacagtgtac 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 209 gaattcaaatctccagcaaccacatgatagctcacaaccatcagtacagctacagtgtgc 268
Query: 65 tcatatacataaaataaataaatcttttaaaacaaacaaacaaacacctgccgtgctttc 124
||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 269 tcatatatgtaaaataaataaatctttta----aaacaaacaaactcctgctgtgctttc 324
Query: 125 caaagcaactgttgagaatacttatggagtctgcagcagttctagagaattctcctaggg 184
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 325 caaagcaactgttgagaatacttacggagtctgcagcagttctagagaattcccctaggg 384
Query: 185 agtgagaaagccatttgtgtggccagaatgcagaggagagagctaagtgacccttatcta 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 agtgagaaagccatttgtgtggccagagtgcagaggagagagctaagtgacccttatcta 444
Query: 245 ccaagaaagtctggaggagccaatccaaaagattactgctttgggtgtgacatccatgga 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaagaaagtctggacgagccaatccaaaagattactgctttgggtgtgacatccatgga 504
Query: 305 gcaaaggcacagggtgggctgggggttcattttgttcccatttgtctgaacattcatctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaaaggcacagggtgggctgggggttcattttgttcccatttgtctgaacattcatctc 564
Query: 365 acttcaataactaccagacccagggatacaggacaggagggacaaatagggacactttca 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 acttcaataactaccagacccagggatacaggacaggagggacagatagggacactttca 624
Query: 425 tattccatactagaaagacacacttgtactctgccaggtggcagagaagtctcgacgtgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattccatactagaaagacacacttgtactctgccaggtggcagagaagtctcgacgtgt 684
Query: 485 acttattaatacgttagcgtgagcacgctgttagcgctttgcttgtttggggctcacacc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttattaatacgttagcgtgagcacgctgttagcgctttgcttgtttggggctcacacc 744
Query: 545 tcttcct 551
|||||||
Sbjct: 745 tcttcct 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_j08.g1 MSMg01no365_j08.g1 CHROMAT_FILE:
MSMg01no365_j08.g1 PHD_FILE: MSMg01no365_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:07 2005
(479 letters)
>mm_chr4_46271182_46272060
Length = 879
Score = 859 bits (444), Expect = 0.0
Identities = 470/479 (98%)
Strand = Plus / Minus
Query: 1 cacctgtgcagactctggggagggtgccaagacttgtttcttcccttaaggggctgggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cacctgtgcagactctggggagggtgccaagacttgtttcttcccttaaggggctgggct 620
Query: 61 gtgcaacctgaggatagcactggccactctctggggctcagaatcgctcgtatataacaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtgcaacctgaggatagcaatggccactctctggggctcagaatcgctcgtatataacaa 560
Query: 121 gggggctctggggtccctcacatctccatcctggtcttaggtaattagtctttcacaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gggggctctggggtccctcacatctccatcctggtcttaggtaattagtctttcacaaac 500
Query: 181 tgttcggcagagctgtgctctgtgggatggcaatgagattcagcgagcgccaaaatgagg 240
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 tgttcagcagagctgtgctctgtggaatggcaatgagattcagcgagcgccaaaatgagg 440
Query: 241 agacagttgcctccgacaaatacatgtgggaacacttacttccattcatacaaggatctt 300
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 439 agacagttgcctccgacaaatacatgtgggcacacttacttccattcatacaaggatcct 380
Query: 301 tgggatgtgtcctcaggggacactgctgtggacagaatgatagacttaaagtgtggtaag 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 379 tgggatgtgtcctcaggggacactactgtggacagaatgatagacttaaagtgtggtaag 320
Query: 361 agactgattggagtcttgcatctactgcttcctagctgggtacggtgtttactattcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 319 agactgattggagtcttgcatctactgcttcctagctgggtacggtgtttactatccttt 260
Query: 421 ctggacttttttttcttccagtttcaatttagagaanaatggacctggtgggatgaaat 479
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 259 ctggacttttttttcttccagtttcaattcagagaaaaatggacctggtgggatgaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
