Query= MSMg01no365_m05.b1 MSMg01no365_m05.b1 CHROMAT_FILE:
MSMg01no365_m05.b1 PHD_FILE: MSMg01no365_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:21 2005
(461 letters)
>mm_chr4_51525754_51526617
Length = 864
Score = 750 bits (388), Expect = 0.0
Identities = 433/460 (94%), Gaps = 20/460 (4%)
Strand = Plus / Plus
Query: 5 gaattctcacattcacacacccattaaaagaagactgtactattagtggagccctgagtg 64
|||||||||||| || |||||||||||||| |||||||||||||
Sbjct: 222 gaattctcacatgcaaacacccattaaaag-----------------ggagccctgagtg 264
Query: 65 gaggattcagcagaacctgaatctatgaaaaaaaaaaaaa---gtccgtctgttttgtca 121
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 gaggattcagcagaacctgaatctatgaaaaaaaaaaaaaaaagtccgtctgttttgtca 324
Query: 122 acactggaaactagagtgatgttagcatatcatatgtgaaaattatatcacctcccaaat 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acactagaaactagagtgatgttagcatatcatatgtgaaaattatatcacctcccaaat 384
Query: 182 aatcgaatagaacggaaagatgcacacatataaacatacaatataaaattacacttaacc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcgaatagaacggaaagatgcacacatataaacatacaatataaaattacacttaacc 444
Query: 242 ttgtcttctggtttaatctgtgtcagtataactatttattgataaagatctaaataatct 301
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ttgtcttctggtttaatctgtgtcagtataactacaaattgataaagatctaaataatct 504
Query: 302 ctagatgctgtgacagaacaagtctaatgactacggtaagtggcaggaatgtacacagta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctagatgctgtgacagaacaagtctaatgactacggtaagtggcaggaatgtacacagta 564
Query: 362 ctcaccatgcccctttacagctacactttgcaggctattgcaccaagaatggaagtctgt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcaccatgcccctttacagctacactttgcaggctattgcaccaagaatggaagtctgt 624
Query: 422 ttatccatccatttaatcaagcttcgtgaattgtcttgat 461
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 625 ttatccatccatttaatcaagctttgtgaattgtcttgat 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 864
Length adjustment: 10
Effective length of query: 451
Effective length of database: 854
Effective search space: 385154
Effective search space used: 385154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_m05.g1 MSMg01no365_m05.g1 CHROMAT_FILE:
MSMg01no365_m05.g1 PHD_FILE: MSMg01no365_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:21 2005
(533 letters)
>mm_chr4_51691362_51692293
Length = 932
Score = 746 bits (386), Expect = 0.0
Identities = 464/520 (89%), Gaps = 47/520 (9%)
Strand = Plus / Minus
Query: 1 tcattaatgtaaatcttggcatcttttagcccttgtttagttgcatacattttaaaaatt 60
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 519 tcattaatgtaaatcttgacatcttttagcccttgttttgttgcatacattttaaaaatt 460
Query: 61 aaaatatgcactgtcacaaggttaacaattagcctttcacaacagagaagaacctcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaaatatgcactgtcacaaggttaacaattagcctttcacaacagagaagaacctcaaat 400
Query: 121 ctaaagggacatttttttctcatcttttatgttaatgtgaaagtaggggaggcaaaaaaa 180
||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 399 ctaaagggaca-ttttttctcatcttttatgttaatgtgaaagtagcggaggcaataaaa 341
Query: 181 tgctaacaagtcttttctttggggaaattgacaaggtaaacaagagaacggatctaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgctaacaagtcttttctttggggaaattgacaaggtaaacaagagaacggatctaagca 281
Query: 241 tttaatttatacatctgctacaattttaaatcctatctgacaggtattgcatttatagca 300
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 280 tttaatttatacatctgccacaattttaaatcctatctgacaggtattacatttatagca 221
Query: 301 gtgggtgggacctggagactacacatacaaacacaca----------------------- 337
|||||||| ||||||||||||||||||||||||||||
Sbjct: 220 gtgggtggaacctggagactacacatacaaacacacatacaaacatacatacacacacac 161
Query: 338 -----------------------cacacacacacacacacacacacacaatttattcatt 374
|||||||||||||||||||||||||||||||||||||
Sbjct: 160 acacacacacacacacacacacacacacacacacacacacacacacacaatttattcatt 101
Query: 375 ttctattaaatgcaactgccatagtttgttccttcttgtcattatgttaccattaaaaaa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ttctattaaatgcaactgccatagtttgttccttcttgtcattatgttaccattaaaaaa 41
Query: 435 tgtccttagagaactgaatttgtatcttgtgccaagctct 474
||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 40 tgtccatagagaactgaatttgtatcttgtgtcaagctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space: 482206
Effective search space used: 482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
