Query= MSMg01no365_n16.b1 MSMg01no365_n16.b1 CHROMAT_FILE:
MSMg01no365_n16.b1 PHD_FILE: MSMg01no365_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:28 2005
(473 letters)
>mm_chr4_101483773_101484644
Length = 872
Score = 808 bits (418), Expect = 0.0
Identities = 430/434 (99%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 40 tttaatatttatttatttatctatctatttatctatttatttaatgtaagtacactgtag 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tttaatatttatttatttatctatctatttatctatttatttaatgtaagtacactgtag 813
Query: 100 ctgtcttcagacactccagaagatgggatcggatttcgttacggatggttgtgagccacc 159
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 812 ctgtcttcagacactccagaagatgggatcggatttcattacggatggttgtgagccacc 753
Query: 160 atgtggttgctgggatttgaactcaggacctttggaagagcagtcggcgctcttaaccac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atgtggttgctgggatttgaactcaggacctttggaagagcagtcggcgctcttaaccac 693
Query: 220 tgagccatctcaccagccccctaatgaaatctaatatggaagctttcacacactgaatat 279
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 692 tgagccatctcaccagccccctaatggaatctaatatggaagctttcacacactgaa-at 634
Query: 280 gaaaatggaattccttccctgcagtttgtatgtggatttttgcatagctgtgtgtcaaaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaaaatggaattccttccctgcagtttgtatgtggatttttgcatagctgtgtgtcaaaa 574
Query: 340 attgcctattagagttcacttagttaaggcattacctaccatatttggtgatctgtaaca 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 attgcctattagagttcacttagttaaggcattacctaccatatttggtgatctgtaaca 514
Query: 400 aaatatgttctgacagcaaccgtcacaccattatcattttatgacttaagaaataaaatg 459
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaataggttctgacagcaaccgtcacaccattatcattttatgacttaagaaataaaatg 454
Query: 460 cagagtccatgaat 473
||||||||||||||
Sbjct: 453 cagagtccatgaat 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_n16.g1 MSMg01no365_n16.g1 CHROMAT_FILE:
MSMg01no365_n16.g1 PHD_FILE: MSMg01no365_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:28 2005
(517 letters)
>mm_chr4_101292276_101293192
Length = 917
Score = 977 bits (505), Expect = 0.0
Identities = 514/517 (99%)
Strand = Plus / Plus
Query: 1 tagttttctagatataccctggctatacagtgaagtgtttgaatacaccaggatatgttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tagttttctagatataccctggctatacagtgaagtgtttgaatacaccaggatatactt 260
Query: 61 gagaggctcagaccagcagcacgtctgcggaaagaagtgtggctggtctttgtagggcgt 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gagaggctcagaccagcagcacgtctgtggaaagaagtgtggctggtctttgtagggcgt 320
Query: 121 ctgagccatatatacttagctaggttcacttgacacaccactacaaacgtgactcttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagccatatatacttagctaggttcacttgacacaccactacaaacgtgactcttctt 380
Query: 181 tttcctggccagccacagcattaacgcttgcaaggtgatctggctgggtaccagagattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcctggccagccacagcattaacgcttgcaaggtgatctggctgggtaccagagattc 440
Query: 241 actgcagcttctgaataaccagcacaaagcagctctgtgaccggcactgttaaccaagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgcagcttctgaataaccagcacaaagcagctctgtgaccggcactgttaaccaagat 500
Query: 301 gctgctgcattagaaatcgtaaagagatgaatctcaaccacctaggctgggaggatgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgctgcattagaaatcgtaaagagatgaatctcaaccacctaggctgggaggatgctg 560
Query: 361 taggaaccttttcccatgctaatccttcaccttcgctggaggctcaggggctggtcttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggaaccttttcccatgctaatccttcaccttcgctggaggctcaggggctggtcttgg 620
Query: 421 cttttgaagttctgctggctgcctcttttgtgagaaggggaatcagaatcacagggtttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttttgaagttctgctggctgcctcttttgtgagaaggggaatcagaatcacagggtttg 680
Query: 481 ggctggtggtggctagatgtatacccgggagcctgca 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctggtggtggctagatgtatacccgggagcctgca 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
