BAC Information

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BAC

Clone NameMSMg01-365P13
Chromosome4 (Build37)
Map Location 15,732,881 - 15,733,409
singlet/doubletsinglet
Overlap genenone
Upstream geneOtud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095
Downstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365P13.T7 (MSMg01no365_p13.b1)MSMg01-365P13.TJ (MSMg01no365_p13.g1)
ACCAG473799AG473800
length7371,339
length of high quality
(start - end)
532 (60 - 591)---
definitionCHROMAT_FILE: MSMg01no365_p13.b1 PHD_FILE: MSMg01no365_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:39 2005CHROMAT_FILE: MSMg01no365_p13.g1 PHD_FILE: MSMg01no365_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATAATATACTATAGATTTTGGGCACTAAATTTAGTATTTGGTTTATAACA
ATACCATTGTATTAAATGTACATGTAGTCTCAGAGTTCTCTTTTCTGTCT
CATCTCACTCACATTCCTTGTGATTTCCCATTTCCTGTTTTGGATCAAGG
ATATTCTCTTCCCACTACAAAATAGATGGCAAAAGTGGTAACATTTTCCC
ATCTTTAGAAATTTTAAGAGACTTTCCCATTGGATCATTGATCTCCCATT
TCATTATAAAAAAAACATTTCTAAACAACAGTCTGTTTTATATTTCTGAA
CATACAATACCACAATCCAATTTAAGAGTAATTCATTACTAAGTAAATAA
TTTACCCGAGTGATAGTAAGTGTGTTCCTCTATAAGCTGCCTATCCTCAC
CAATTTGCTTCCTAAATTAGTACCTGCCATAATTTATAGGGGAAAGGTGA
ATTATAAACCACATAAATCAATAATTGGGATTCACTTGTGATTATATACA
GTTTTATATTTATATTTATTAAGAACACTTTTCATTTACAAGAACATTAG
CATTTCACCGAGCTTTCCATTTTCTTTAGATGCAAAATGATACCTGATCA
CAAATATTCACTAAATGCTATGAACACCCATAGTAATATTGTTATACCTA
GGCACTTTGTGAACCTAACTAAGACCTCTTCTTTACG
CCCTTTCCCNCCCTACCCTANCCNCTCTGCCCCCCCCATTCAGATCACAA
ATTATTTTATTCCACTTGTTGTGTTTGTCTCTCCTAATATTATCTGGTGT
GTCGTTATGACGAGGAGGCAGGCACCATGTTCCTCCCCCATCAGTAGTGG
TGAGGAGAACTCATACTAGAAATTCTGCACCCCGGCGAACAACTTCCCTT
ATGCGCATCATGTTGCATCTCCTGGGCATTCTATACATATACTTAAGGAT
TGACTAGCATGAGAGGTATTCGTTCTTGCGTCCTTTCCCTGACTTGAGCG
TGTGCTTCTTGTGTGAAGCCGCATTACCATATTTCTCGTGCATATGTATA
AAGTACAATTGCTCAGAATTAATTTGATCTATAGAGTTGAGCATACCATA
GTTATATATGGCCCAACACACTACATAAGTCCATCGCGATAGAGAACGAC
AGAAATACACTACTACAATGAGCGAATGCTCACATGTCCACATCATTTCC
ATAGAGCATATAATGAGAAGGTAGGTGACTCATGGCCCTATCAATAAGAC
TTGATATATCATATGCATATCTCTTAACGTTTTGCTCCTTTTAACTCGCG
CGTAGACGCTAGGCGCACGATCCACATCCATATTACACTCTAGAGAGTTT
AACATATGTCTCGTCTGTTAAGCCGAGATTGCGCTTGTTGCTGTATCGTT
GATAGTCTGTTCCCTAATACCCACACAGTGTTCTACACTCTCTCTTCTAT
TATAGTGTCGCTCTTGTACATTAACCCTGGGTTATATCCTGTCGATGGTT
GCGTGCTTCTACTATCGTTATTATCGTATCCGACGAACCGTAAATGATCG
AGGTGAACTGAATCAAACTTTTCCACACAGTGAACCCTGGCCCATCGTTT
ATCTACGCTTTTCCAAGCCGACCGCCCGCGTCAGTGTGCCCACACATATG
ACCAGTAGATATAAGAGCAGACGACCACACTACACAACATGATCATGCCT
ACTCTCGCCGACCCGATTAAATATATTTTCATATGTAGGCGCCCAGCTTA
GTCTACGTAACACCACGTCTTGTTAAGGTACAGATGATTCACTTACCATC
ATACTCACATCCTTTATATAATCTCCATATCATATTAACGACTATACGCG
CGTTAAGCATCTCAAACGTATGATTTTCCGACGAGAAATGTGCGTATCTA
GATGTCTAATTAAAAATCTTCAGCGCCTATCGTCTACTTCTACACCCGTC
TACCCTACCTACATATATTGCACTATTTCTATTGCTATATCACTACACAC
TATACATCCACCTTCTCTCAGCTCTAATATCATATACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_p13.b1 MSMg01no365_p13.b1 CHROMAT_FILE:
MSMg01no365_p13.b1 PHD_FILE: MSMg01no365_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:39 2005
         (532 letters)



>mm_chr4_15732681_15733612
          Length = 932

 Score = 1000 bits (517), Expect = 0.0
 Identities = 526/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagattttgggcactaaatttagtatttggtttataacaataccattgtattaaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagattttgggcactaaatttagtatttggtttataacaataccattgtattaaatgt 260

                                                                       
Query: 61  acatgtagtctcagagttctcttttctgtctcatctcactcacattccttgtgatttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgtagtctcagagttctcttttctgtctcatctcactcacattccttgtgatttccc 320

                                                                       
Query: 121 atttcctgttttggatcaaggatattctcttcccactacaaaatagatggcaaaagtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcctgttttggatcaaggatattctcttcccactacaaaatagatggcaaaagtggt 380

                                                                       
Query: 181 aacattttcccatctttagaaattttaagagactttcccattggatcattgatctcccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacattttcccatctttagaaattttaagagactttcccattggatcattgatctcccat 440

                                                                       
Query: 241 ttcattataaaaaaaacatttctaaacaacagtctgttttatatttctgaacatacaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcattataaaaaaaacatttctaaacaacagtctgttttatatttctgaacatacaata 500

                                                                       
Query: 301 ccacaatccaatttaagagtaattcattactaagtaaataatttacccgagtgatagtaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ccacaatccaatttaagagtaattcattactaagtaaataatttacccgagtgataataa 560

                                                                       
Query: 361 gtgtgttcctctataagctgcctatcctcaccaatttgcttcctaaattagtacctgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgttcctctataagctgcctatcctcaccaatttgcttcctaaattagtacctgcca 620

                                                                       
Query: 421 taatttataggggaaaggtgaattataaaccacataaatcaataattgggattcacttgt 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatttagaggggaaaggtgaattataaaccacataaatcaataattgggattcacttgt 680

                                                            
Query: 481 gattatatacagttttatatttatatttattaagaacacttttcattta 529
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattatatacagctttatatttatatttattaagaacacttttcattta 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)