BAC Information

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BAC

Clone NameMSMg01-366E20
Chromosome4 (Build37)
Map Location 149,936,115 - 150,209,197
singlet/doubletdoublet
Overlap geneRere, Slc45a1
Upstream geneCtnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091
Downstream geneLOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366E20.T7 (MSMg01no366_e20.b1)MSMg01-366E20.TJ (MSMg01no366_e20.g1)
ACCAG474048AG474049
length786790
length of high quality
(start - end)		439 (49 - 487)337 (80 - 416)
definitionCHROMAT_FILE: MSMg01no366_e20.b1 PHD_FILE: MSMg01no366_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:07 2005CHROMAT_FILE: MSMg01no366_e20.g1 PHD_FILE: MSMg01no366_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,208,776 - 150,209,197)(149,936,115 - 149,936,451)
sequence
NNNAAACCATAATTTGCGGGCGCTAAACGACTCCTATATTCAGAGGATCC
GCGGAATTCCTTGACCTGAAGTTGTACCACTCCAACATCTGCTTCTGTCT
TCATAAGGCCCTTTTGCAAGGACACCCATCATTGGATTGAGTGGCAATGT
GCTTTCTCTTAGCCTGCCACAGCTTCAGTGATTGTATTTCCAAACAGGGT
CCCCTCCTGAGACATGGGGATTAGAATTTCAGTGTCCTCTTGTGGAGCAC
AATTCAACCTATAACGGCATCTCTAGCTTACGGGTCAAAACAGAAATTTT
AATTCTCGCCGTGTAAACCTTCTTGCGGGTCTCATCAAGCAATGGCACTA
ATCACGCTCTTGCTTCAGCTGAGCATCGCGGAAGTCAGCTCTGACCGGTC
TCCCTGGCTCATGAGCCACAGCCCTCGTTTGCCGTCAGTGTGCCTCCCTA
CCACATTTTCTTGTAATCTACAATATTTATTTCTCGTGTTATTTTTACTC
GTACGCCAAGCTTTCAGTATTTCATCTTGCAGTTTATTTTTAGTACAGAA
ACTTTTGACTGACTTCCCCGGAAGGGAAATAAAATTTGTTTCCCACCTTC
TTTCTTTTCCCAGGTACTCAGGAAAACAAAACCCCTTTGTTGAAAATCAA
GAATTGGCTTGTAATTTTTAAACCCCGCGTTTTTGAACGGTTTGGAAAAA
AAAACTTTTTTTCTCCCACCAGAGAAATCCTCTCCCCGCGAGAAGTTTGA
AACCTGCCCGTTTTTTATCTTATTGGAAAAAAAAAG

NTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGCTCAGCACTAAACTG
CTTTGAGCATGTGGTCCAGCACCCCTCAGTCATAGCCTGAGTTGTCATAT
CTTTAGCCCATATAGCCTTATATCAGGACATGAAACTGGACAATATTTCT
CTGAATAAAATGTGCATTCAGGTTTGCCTCAGGGGATATGTATGGAGAGA
GGGTTCTGGGAAAATGGCTCTTGCAGAGGACTGGGATGTTTGGAGCACCC
ACATGGTGGTCCATAACCATGGACCCCAGTGTCTTCCGAGCTCTCCTGGC
ACATGTAGGCAAAGCATGATTAAGTAACCCCCAGAACTCACAGTGTGTTA
CGAGACAGCGAGAAACATGGGACAGCGGGTTTAAGCTTTCTAGAAACTAG
TCATTTATGTCTTTTATGCAGAATTCACAGAAAACGTTTCCTATATTTCA
ACAAGAAACCCGAGCTATCGCTTGCTTCTTTTTTCACCGGATTTGCACCT
TTGCTGTCCTTGTAACAAAACGTCAGGGTACAATTATTACTCTCCTCCTC
TATTTTATCCTCCCCTTCCCTTCACCAATTTTTTTTTTACCCCAGGGTTC
TCCGAACCCGTTGTTATTCTTTTTATTCTTTTTGTGATCTCTATCCTGAT
TTTTTATCTTTGACTTTTTAAATTTATTACCTTTTTCTCTTTCCCCTTTT
CTATTAATTTTTTTTAGCGTTTTTCTTCCTCCTGCGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_e20.b1 MSMg01no366_e20.b1 CHROMAT_FILE:
MSMg01no366_e20.b1 PHD_FILE: MSMg01no366_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:07 2005
         (439 letters)



>mm_chr4_150208359_150209197
          Length = 839

 Score =  777 bits (402), Expect = 0.0
 Identities = 417/422 (98%)
 Strand = Plus / Minus

                                                                       
Query: 18  ctgaagttgtaccactccaacatctgcttctgtcttcataaggcccttttgcaaggacac 77
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ctgaaattgtaccactccaacatctgcttctgtcttcataaggcccttttgcaaggacac 780

                                                                       
Query: 78  ccatcattggattgagtggcaatgtgctttctcttagcctgccacagcttcagtgattgt 137
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 779 ccatcattggattgagtggcaatgtgctttctcttagcctgccacagctacagtgattgt 720

                                                                       
Query: 138 atttccaaacagggtcccctcctgagacatggggattagaatttcagtgtcctcttgtgg 197
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 719 atttccaaacagggtcccctcctgagacatggggattagaagttcagtgtcctcttgtgg 660

                                                                       
Query: 198 agcacaattcaacctataacggcatctctagcttacgggtcaaaacagaaattttaattc 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 agcacaattcaacctataacggcatctctagcttacgggtcaaaacagaaattttaattc 600

                                                                       
Query: 258 tcgccgtgtaaaccttcttgcgggtctcatcaagcaatggcactaatcacgctcttgctt 317
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcgccgtgcaaaccttcttgcgggtctcatcaagcaatggcactaatcacgctcttgctt 540

                                                                       
Query: 318 cagctgagcatcgcggaagtcagctctgaccggtctccctggctcatgagccacagccct 377
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cagccgagcatcgcggaagtcagctctgaccggtctccctggctcatgagccacagccct 480

                                                                       
Query: 378 cgtttgccgtcagtgtgcctccctaccacattttcttgtaatctacaatatttatttctc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cgtttgccgtcagtgtgcctccctaccacattttcttgtaatctacaatatttatttctc 420

             
Query: 438 gt 439
           ||
Sbjct: 419 gt 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_e20.g1 MSMg01no366_e20.g1 CHROMAT_FILE:
MSMg01no366_e20.g1 PHD_FILE: MSMg01no366_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:07 2005
         (337 letters)



>mm_chr4_149935915_149936651
          Length = 737

 Score =  652 bits (337), Expect = 0.0
 Identities = 337/337 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaggctcagcactaaactgctttgagcatgtggtccagcacccctcagtcatagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaggctcagcactaaactgctttgagcatgtggtccagcacccctcagtcatagcctg 260

                                                                       
Query: 61  agttgtcatatctttagcccatatagccttatatcaggacatgaaactggacaatatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgtcatatctttagcccatatagccttatatcaggacatgaaactggacaatatttc 320

                                                                       
Query: 121 tctgaataaaatgtgcattcaggtttgcctcaggggatatgtatggagagagggttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaataaaatgtgcattcaggtttgcctcaggggatatgtatggagagagggttctgg 380

                                                                       
Query: 181 gaaaatggctcttgcagaggactgggatgtttggagcacccacatggtggtccataacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaatggctcttgcagaggactgggatgtttggagcacccacatggtggtccataacca 440

                                                                       
Query: 241 tggaccccagtgtcttccgagctctcctggcacatgtaggcaaagcatgattaagtaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaccccagtgtcttccgagctctcctggcacatgtaggcaaagcatgattaagtaacc 500

                                                
Query: 301 cccagaactcacagtgtgttacgagacagcgagaaac 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagaactcacagtgtgttacgagacagcgagaaac 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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