Query= MSMg01no366_g14.b1 MSMg01no366_g14.b1 CHROMAT_FILE:
MSMg01no366_g14.b1 PHD_FILE: MSMg01no366_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:15 2005
(459 letters)
>mm_chr4_80382001_80382859
Length = 859
Score = 841 bits (435), Expect = 0.0
Identities = 447/451 (99%), Gaps = 2/451 (0%)
Strand = Plus / Plus
Query: 10 tctctact-gttctaattcatcttgcctcaactttccatggtctttatctctcctgtaat 68
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tctctactggtt-taattcatcttgcctcaactttccatggtctttatctctcctgtaat 268
Query: 69 atttatttcgtccttctaaaaaaatcttgcaaagtattttacaaaaatataaaatgatca 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atttatttcgtccttctaaaaaaatcttgcaaagtattttacaaaaatataaaatgatca 328
Query: 129 catttatactttaatccctgtaaaacgtatctgtgacttatgccgcaatgttacagcttg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 catttatactttaatccctgtaaaacgtatctgtgacttatgccgcaatgttacagcttg 388
Query: 189 attactttaaaattcctagcataaatagaaaggagaaataactgctgtgttatataagaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attactttaaaattcctagcataaatagaaaggagaaataactgctgtgttatataagaa 448
Query: 249 ggtggcttcatatgagctcattttgttaattacaagtatttttaattaattttaagtgaa 308
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 449 ggtggcttcatatgagctcattttgttaagcacaagtatttttaattaattttaagtgaa 508
Query: 309 tagtgcattgacaaagctcaaaggtcacagaatatgaatatcaccttctcttcctcattt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tagtgcattgacaaagctcaaaggtcacagaatatgaatatcaccttctcttcctcattt 568
Query: 369 ctacatgttctgccacctctttataactttggactaaacaccattgttatttatatctgc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctacatgttctgccacctctttataactttggactaaacaccattgttatttatatctgc 628
Query: 429 ttatcttttcaaagaatatttactcatataa 459
|||||||||||||||||||||||||||||||
Sbjct: 629 ttatcttttcaaagaatatttactcatataa 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_g14.g1 MSMg01no366_g14.g1 CHROMAT_FILE:
MSMg01no366_g14.g1 PHD_FILE: MSMg01no366_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:15 2005
(245 letters)
>mm_chr4_80568849_80569493
Length = 645
Score = 412 bits (213), Expect = e-119
Identities = 241/259 (93%), Gaps = 14/259 (5%)
Strand = Plus / Minus
Query: 1 ctgtaatctcttaaattctaaagctgtgtaaattggacatggttctatctactgagagat 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctgtactctcttaaattctaaagctgtgtaaattggacatggttctatctactgagagat 361
Query: 61 ccacaaaggagcaaaatcaaagccaacattaagcaaactgtaactaattgtttgacccgc 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccacaaaggaacaaaatcaaagccaacattaagcaaactgtaactaattgtttgacccgc 301
Query: 121 aggataagtcaaaattaaagatatgtaatatggcagctaaggttggaagggagggaagag 180
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 300 aggataagtcaaaattaacgatatgtaatatgggagctaaggttggaagggagggaagag 241
Query: 181 acaggaaaaggcgagtgagccttctgaagggtctgagga--------------ccagttg 226
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 240 acaggaaaaggcgagtgagccttctgaagggtctgaggactagaaatggggttccagttg 181
Query: 227 ggaaataaggtactaatgt 245
|||||||||||||||||||
Sbjct: 180 ggaaataaggtactaatgt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
