Query= MSMg01no366_k10.b1 MSMg01no366_k10.b1 CHROMAT_FILE:
MSMg01no366_k10.b1 PHD_FILE: MSMg01no366_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:33 2005
(476 letters)
>mm_chr4_66215725_66216599
Length = 875
Score = 861 bits (445), Expect = 0.0
Identities = 468/479 (97%), Gaps = 7/479 (1%)
Strand = Plus / Minus
Query: 1 caaaagcagcactgattttcagttagagcaacactggaaagagctgttcactccagcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 caaaagcagcactgattttcagttagagcaacactggaaagagctgttcactccagcggg 790
Query: 61 tccttcggtcatcctttaatgcttcctgggaaggccttcctgctcctgcttagaggtgtg 120
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tccttcgatcatcctttaatccttcctgggaaggccttcctgctcctgcttagaggtgtg 730
Query: 121 ttggttagttgactacaaatctattcactttgacaattaatattaagtgtcacacagacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttggttagttgactacaaatctattcactttgacaattaatattaagtgtcacacagacc 670
Query: 181 atcagttatttagtgactgccattaaataacaggagagtaaatagggaatcttgaaacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atcagttatttagtgactgccattaaataacaggagagtaaatagggaatcttgaaacta 610
Query: 241 aagggttttacctt---attttagaaaaaagagccaatgtgtgtatttgtagcaatatac 297
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagggttttaccataaca----agaaaaaagagccaatgtgtgtatttgtagcaatatac 554
Query: 298 aagacttgcaaagaaaaacagttgacttctcaatttactctccattggctttacaggaga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagacttgcaaagaaaaacagttgacttctcaatttactctccattggctttacaggaga 494
Query: 358 ccttcctgaacaaagtctttattagataagatacaagtttgaaggtgctgtgcttaaatt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccttcctgaacaaagtctttattagataagatacaagtttgaaggtgctgtgcttaaatt 434
Query: 418 aggatcacatgtaattaaatatttttagatcccaccatttttgtatcatatttactggg 476
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 433 aggatcacatgtaattaaatatttttagatccaaccatttttgtatcatatttactggg 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space: 403090
Effective search space used: 403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_k10.g1 MSMg01no366_k10.g1 CHROMAT_FILE:
MSMg01no366_k10.g1 PHD_FILE: MSMg01no366_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:33 2005
(459 letters)
>mm_chr4_65999810_66000667
Length = 858
Score = 804 bits (416), Expect = 0.0
Identities = 449/460 (97%), Gaps = 3/460 (0%)
Strand = Plus / Plus
Query: 1 tcaggtctatctggacctctcatctgccacacaaggtagagtatcagaagtcattgacaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tcaggtctatctggacctctcatctgccacacaaggtagagtatcaaaagtcattgacaa 260
Query: 61 aaaaggacaaaggatgattgtactgtgggcagtcctactacatttctcattctgttgtcc 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaggacaaaagatgattgtactgtgggcagtcctactacatttctcattctgttgtcc 320
Query: 121 atttgtgaaatggtaagaaaatgcttcaacttaatgggctgctgtgatgataaaactgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtgaaatggtaagaaaatgcttcaacttaatgggctgctgtgatgataaaactgaa 380
Query: 181 aaaaaatatattagtcttatatctgagacagaaacaattcctcaggtgaggtttcctatt 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaa-tatattagtcttatatctgagacagaaacaattcctcaggtgaggtttcctatt 439
Query: 241 gtcctgtttgtcaaaaatagcactatccatttcaagtccactttttttt-ccaatttgaa 299
|||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 440 gtccggtgtgtcaaaaatagcactacccatttcaagtccactttttttttccaatttgaa 499
Query: 300 atatgaacacatgattttaagctatacactattctttttaatttgtccccagactctcat 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 atatgaacacatgattttaagctatacactattatttttaatttgtccccagactctcat 559
Query: 360 attaataccttagtatataatagagtacagctttaaaaatcccagtctttactaattcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attaataccttagtatataatagagtacagctttaaaaatcccagtctttactaattcca 619
Query: 420 gtggtataaaagttcagtatctcattaaaatattcaatta 459
|||||||||||||||||| || ||||||||||||||||||
Sbjct: 620 gtggtataaaagttcagtgtc-cattaaaatattcaatta 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 858
Length adjustment: 10
Effective length of query: 449
Effective length of database: 848
Effective search space: 380752
Effective search space used: 380752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
