Query= MSMg01no367_b06.b1 MSMg01no367_b06.b1 CHROMAT_FILE:
MSMg01no367_b06.b1 PHD_FILE: MSMg01no367_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:08 2005
(579 letters)
>mm_chr4_14597979_14598959
Length = 981
Score = 1052 bits (544), Expect = 0.0
Identities = 568/577 (98%), Gaps = 3/577 (0%)
Strand = Plus / Minus
Query: 5 gaattccattcgctctactggaactcccacttcctatttcctgcctcaactcattggcca 64
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 837 gaattccattcgctatactggaacgcccacttcctatttcctgcctcaactcattggcca 778
Query: 65 atcagcgttttatttacaatcagctgtatggcaatgcatgcagtacaaaagattctctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atcagcgttttatttacaatcagctgtatggcaatgcatgcagtacaaaagattctctct 718
Query: 125 acagtgttggcctctgaactgagaatcttaacaagatcgattattttatagattataaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 acagtgttggcctctgaactgagaatcttaacaagatcgattattttatagattataaat 658
Query: 185 tcaatacgggtctcatttagctaaaattaaggttatttgggtcaggaaaaa--tgtctac 242
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 657 tcaatacgggtctcatttagctaaaattaaggctatttgggtcaggaaaaatttgtctac 598
Query: 243 tgctttgccctttataacttctggaggatttcacaatttttggctcatggttcttcctac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgctttgccctttataacttctggaggatttcacaatttttggctcatggttcttcctac 538
Query: 303 attttcaagccaatgttggtagatcttgtcctttcatattgcatcatttggaccttctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 attttcaagccaatgttggtagatcttgtcctttcatattgcatcatttggaccttctct 478
Query: 363 cctgcctgcattttttacttaaaattttttggaggggggcatttaatgcatgcatactat 422
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 477 cctgcctgcattttttacttaaaagtttttggaggggggcatttaatgcatacatactat 418
Query: 423 atttatatcatttcaatctctttccccctctgactctacgcccctcccactccttctcan 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atttatatcatttcaatctctttccccctctgactctacgcccctcccactccttctcaa 358
Query: 483 attcatgacattcttaattattatggctaaatctatgtatcatctatctacatctatcat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 attcatgacattcttaattattatggctaaatctatgtatcatctatctacatctatcat 298
Query: 543 ctatctctattttatctatctacatatcatttatgta 579
||||||||| |||||||||||||||||||||||||||
Sbjct: 297 ctatctcta-tttatctatctacatatcatttatgta 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 981
Length adjustment: 10
Effective length of query: 569
Effective length of database: 971
Effective search space: 552499
Effective search space used: 552499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_b06.g1 MSMg01no367_b06.g1 CHROMAT_FILE:
MSMg01no367_b06.g1 PHD_FILE: MSMg01no367_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:08 2005
(443 letters)
>mm_chr4_14396762_14397603
Length = 842
Score = 849 bits (439), Expect = 0.0
Identities = 442/443 (99%), Gaps = 1/443 (0%)
Strand = Plus / Plus
Query: 1 ccggagctgcctcgggcttttgctggtgtcaaccctgtagtaaatgggtttttataatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccggagctgcctcgggcttttgctggtgtcaaccctgtagtaaatgggtttttataatga 260
Query: 61 atttaccgttaattctctcacacacacaaaccattagaattgcattaaatggctgaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaccgttaattctctcacacacacaaaccattagaattgcattaaatggctgaataa 320
Query: 121 atgccaccaaggctcagagcatgaatgtcttttgttcatttgaagaagctcagaagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgccaccaaggctcagagcatgaatgtcttttgttcatttgaagaagctcagaagagtt 380
Query: 181 cagaatctcaaattaataactcatcgtttgaaagatcaacaggctgcccattgactggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaatctcaaattaataactcatcgtttgaaagatcaacaggctgcccattgactggag 440
Query: 241 ggggcagatcctgtggaggactctgagtgccattcactaggatggagagtctatgatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggcagatcctgtggaggactctgagtgccattcactaggatggagagtctatgatttc 500
Query: 301 aaggataaccagagtagagattattgttctcaatcccaaatatagggtgtcttattgaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggataaccagagtagagattattgttctcaatcccaaatatagggtgtcttattgaac 560
Query: 361 aaaggccatttttaaagtcatatttcatttgtccatttcagcttttaaatttaaaaagta 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggc-atttttaaagtcatatttcatttgtccatttcagcttttaaatttaaaaagta 619
Query: 421 tttttctttttactaaataaggc 443
|||||||||||||||||||||||
Sbjct: 620 tttttctttttactaaataaggc 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
