Query= MSMg01no367_d11.b1 MSMg01no367_d11.b1 CHROMAT_FILE:
MSMg01no367_d11.b1 PHD_FILE: MSMg01no367_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:18 2005
(543 letters)
>mm_chr4_141919104_141920048
Length = 945
Score = 988 bits (511), Expect = 0.0
Identities = 532/540 (98%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacttcagtgggtatggggacagaggaatgagatgatctacgagaagccatcac 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacttcggtgggtatggggacagaggaatgagatgatctacgagaagccatcac 263
Query: 64 tatatatatat--gtcactgtgcattctgtgtaagaagacatgatgactgaccccaactg 121
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatatatatatatgtcactgtgcattctgtgtaagaagacatgatgactgaccccaacta 323
Query: 122 ctggtgtgacaccatctagagtcacctaggagactctgtctataagaaagaatttagatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctggtgtgacaccatctagagtcacctaggagactctgtctataagaaagaatttagatt 383
Query: 182 gggctaatcggagtgggaagattcatctcaaatgtgagcagcatcgtcccaaagcctagg 241
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 384 gggctaatcggagtgggaagattcatctcaaatgtgaacagcattgtcccaaagcctagg 443
Query: 242 gtaccagagaccagggtaccagagcccagggtaccagagcccagggtaccagagcccagg 301
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 gtaccagagaccagggtaccagagcctagggtaccagagcccagggtaccagagcccagg 503
Query: 302 gtaccagataactaaggaggagagagtaagctgagcttcagcactcatccatccctctct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaccagataactaaggaggagagagtaagctgagcttcagcactcatccatccctctct 563
Query: 362 gcctcctgactgtggatgctatgtgaccagctgcctcaggctcctgctgtcacgatttcc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcctcctgactgtggatgctatgtgaccagctgcctcaggctcctgctgtcacgatttcc 623
Query: 422 ctgccatgatgggctgtatcctctaactgtgaaccacaacctaccttgccttccttaagt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgccatgatgggctgtatcctctaactgtgaaccacaacctaccttgccttccttaagt 683
Query: 482 tagcatctgtcctgcgggcattttatcacaacaacaaanaagtaactaggatagtggact 541
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 684 tagcatctgtcctgcgggcattttatcacaacaacaaaaaagtaactaggatagtggact 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 945
Length adjustment: 10
Effective length of query: 533
Effective length of database: 935
Effective search space: 498355
Effective search space used: 498355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_d11.g1 MSMg01no367_d11.g1 CHROMAT_FILE:
MSMg01no367_d11.g1 PHD_FILE: MSMg01no367_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:18 2005
(545 letters)
>mm_chr4_142168578_142169520
Length = 943
Score = 986 bits (510), Expect = 0.0
Identities = 536/546 (98%), Gaps = 4/546 (0%)
Strand = Plus / Minus
Query: 1 ccaagcctctgctctgaaaagtggaaagtgtctcagaggagtgagggagaaaatcagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccaagcctctgctctgaaaagtggaaagtgtctcagaggagtgagggagaaaatcagggc 684
Query: 61 agactctggcaaaactcaagatctggtgctagccaaaggcagccatggccttaagttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agactctggcaaaactcaagatctggtgctagccaaaggcagccatggccttaagttgaa 624
Query: 121 agagagagatgagtgtgaaggccaagcgcctccaacaaagatggcacaggatgctaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 agagagagatgagtgtgaaggccaagcgcctccaacaaagatggcacaggacgctaggaa 564
Query: 181 agacac-aacctcagagaaacaagaagagatgacagcatatggatgggtgtcgtgaatga 239
|||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 agacacaaagctcagagaaacaagaagagatgacagcatacggatgggtgtcgtgaatga 504
Query: 240 ggaaccccctccccaaacaagcaatttccagtggggaaaatggaaccatagaaaagaggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggaaccccctccccaaacaagcaatttccagtggggaaaatggaaccatagaaaagaggc 444
Query: 300 ttgcagaaagggcatcacttgtggaggaagctgtgggtactgtaggctgtgatgggaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgcagaaagggcatcacttgtggaggaagctgtgggtactgtaggctgtgatgggaaga 384
Query: 360 tgggtgatctggggttgcgatggcagtgtctgtcgtgtgtgttttacctccccaggtgga 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 tgggtgatctggggttgcgatggcagtgtctgtcgtgtgtgctttacctccccaggtgga 324
Query: 420 aagccctgctaggcactcagtgtgaatcagaagacctacagagggagggcaagccataat 479
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 323 aagccctgctaggcactcagtgtgaatc---agacctgcggagggagggcaagccataat 267
Query: 480 gctgatgcagtctgccctgttggggaatctgtgcccctcaagtgactttttggtttcttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctgatgcagtctgccctgttggggaatctgtgcccctcaagtgactttttggtttcttg 207
Query: 540 ctttac 545
||||||
Sbjct: 206 ctttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 943
Length adjustment: 10
Effective length of query: 535
Effective length of database: 933
Effective search space: 499155
Effective search space used: 499155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
