Query= MSMg01no367_o20.b1 MSMg01no367_o20.b1 CHROMAT_FILE:
MSMg01no367_o20.b1 PHD_FILE: MSMg01no367_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:13 2005
(525 letters)
>mm_chr4_144081489_144082413
Length = 925
Score = 677 bits (350), Expect = 0.0
Identities = 350/350 (100%)
Strand = Plus / Minus
Query: 17 gaattccttagactttaattcagacttgcacttacatccattagaatgccccctctaaac 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaattccttagactttaattcagacttgcacttacatccattagaatgccccctctaaac 291
Query: 77 aaaaggagattcattatagaggcaggatggcatttataacttaaaaacatgttcccagtc 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaaaggagattcattatagaggcaggatggcatttataacttaaaaacatgttcccagtc 231
Query: 137 attggactgcatttgaggcaccaaggcctaacattattactgattcaatgacgggagcct 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 attggactgcatttgaggcaccaaggcctaacattattactgattcaatgacgggagcct 171
Query: 197 ggcatggctgtcctctgagaggtgattgagacagaagcagatacttacaccaaaccactg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ggcatggctgtcctctgagaggtgattgagacagaagcagatacttacaccaaaccactg 111
Query: 257 aactgaagtccagacccctatggttgaattagaggaaggatcaaagaagctgaaggggag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aactgaagtccagacccctatggttgaattagaggaaggatcaaagaagctgaaggggag 51
Query: 317 agtgactccatagaaagaccagcagcctcaacttacccagaccccaggga 366
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 agtgactccatagaaagaccagcagcctcaacttacccagaccccaggga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_o20.g1 MSMg01no367_o20.g1 CHROMAT_FILE:
MSMg01no367_o20.g1 PHD_FILE: MSMg01no367_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:13 2005
(517 letters)
>mm_chr4_143155727_143156641
Length = 915
Score = 789 bits (408), Expect = 0.0
Identities = 493/526 (93%), Gaps = 14/526 (2%)
Strand = Plus / Plus
Query: 1 aagagatctgcttatctttgcctcctgggattaaaggattgtattaccactactcaaatt 60
||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct: 200 aagagatctgcttgtctttgtctcctgggattaaaggattgtactaccaatactcaaatt 259
Query: 61 tttggggtgagatcttgacccaaggtcactactcccttaattcaattcaatatccttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttggggtgagatcttgacccaaggtcactactcccttaattcaattcaatatccttgaa 319
Query: 121 cacaggattcagttccatttcacttcctggtgcccctttaatactcaaagcatatatttt 180
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 320 cacaggattcagttccatttcacttccttgtgcccctttaatactcaaatcatatatttt 379
Query: 181 at-atttttgctttctcatcttgctatgctgctcttcataagccttaatcagagaacaaa 239
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 attatttttgctttctcatcttgctatgctactcttcataagccttaatcagagaacaaa 439
Query: 240 ttctatgatggtattcattaggacctgtctgggcaacagcaacaaaaagccctagaaaag 299
||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 440 ttccatgatggtattcat-aggacctgtctaggaaacagcaacaaaaagccctagaaaag 498
Query: 300 ctgccaaggggaggtccagaatcctggaggtgtgaatagggtaaggagagtactggctga 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 ctgccaaggggaggtccagaatcctggaggtgtgaatagggtaaggagattactggctga 558
Query: 360 gcacctgtggatctcatagctctattaagctgctcttcct-cttcaatcagtgaccacaa 418
||||||||||| |||||||| ||||||||||| ||||| | ||||| |||||||||||||
Sbjct: 559 gcacctgtggacctcatagcactattaagctgttcttc-tgcttcagtcagtgaccacaa 617
Query: 419 ggggatgggactcaatccaccctcaggcagcttctcagggtgacaagcatcacaaaatga 478
||| ||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||
Sbjct: 618 gggaatgggactcaatccaccctcaggca-cttctcaggatggcaagcatcacagaatga 676
Query: 479 ccgacagatatttcttcctga-------tttctcacatgaccatat 517
|||||||||||||||| ||| ||||||||||||||||||
Sbjct: 677 ccgacagatatttctt--tgagatttgatttctcacatgaccatat 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 915
Length adjustment: 10
Effective length of query: 507
Effective length of database: 905
Effective search space: 458835
Effective search space used: 458835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
