Query= MSMg01no368_a19.b1 MSMg01no368_a19.b1 CHROMAT_FILE:
MSMg01no368_a19.b1 PHD_FILE: MSMg01no368_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:23 2005
(564 letters)
>mm_chr4_83868103_83869063
Length = 961
Score = 1046 bits (541), Expect = 0.0
Identities = 554/560 (98%), Gaps = 3/560 (0%)
Strand = Plus / Plus
Query: 5 gaattctataaagctccgggctgtagtattgagtgagcacagacacccccccccaccccc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattctataaagctctgggctgtagtattgagtgagcacagacacccccc---accccc 261
Query: 65 cacccccggcacactgcatgttaagttaacttgtgagagaaatacactccttctcagctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacccccggcacactgcatgttaagttaacttgtgagagaaatacactccttctcagctg 321
Query: 125 tgcaccttgccctccattgtgaaccaggaagcaggggacacaaattcaaatgatgttgat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgcaccttgccctccattgtgaaccaggaagcaggggacacaaattcaaatgatgttgat 381
Query: 185 ttagtttttcaagggagttgcccaggagcattttctgcatggccaaccaaaaacttcagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttagtttttcaagggagttgcccaggagcattttctgcatggccaaccaaaaacttcagc 441
Query: 245 cctgcctggctgcagaagccttcctctgaagaatacaaagagaatatttgatccccagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctgcctggctgcagaagccttcctctgaagaatacaaagagaatatttgatccccagag 501
Query: 305 ctctgctcacaagtggattttttttttatttggattttgggttttgtttctttcatgctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctctgctcacaagtggattttttttttatttggattttgggttttgtttctttcatgctt 561
Query: 365 cccttttaggtttcgaaatcttaaatgccaacttgaaaattcccttttcagcacgacgtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 562 cccttttaggtttcgaaatcttaaatgccaacttgaaaattcccttttcagcatgacgtc 621
Query: 425 tctgctctcctccagcgggatcctaaggaatcaagaccattagtcttagcagtaccggat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctgctctcctccagcgggatcctaaggaatcaagaccattagtcttagcagtaccggat 681
Query: 485 ccggacacggcacaggtgggagactggagaanagcgttgtatgtaagcaggttccatgag 544
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 682 ccggacacggcacaggtgggagactggagaaaagcgttgtatgtaagcaggttccatgag 741
Query: 545 gccactgtattttttggctt 564
||||||||||||||||||||
Sbjct: 742 gccactgtattttttggctt 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 961
Length adjustment: 10
Effective length of query: 554
Effective length of database: 951
Effective search space: 526854
Effective search space used: 526854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_a19.g1 MSMg01no368_a19.g1 CHROMAT_FILE:
MSMg01no368_a19.g1 PHD_FILE: MSMg01no368_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:23 2005
(460 letters)
>mm_chr4_84012521_84013381
Length = 861
Score = 845 bits (437), Expect = 0.0
Identities = 455/461 (98%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 1 tacagtttgtggcacccgtgtaatgcttagcagtaggtacagctgttaactattcgctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tacagtttgtggcacccgtgtaatgcttagcagtaggtacagctgttaactattcgctta 602
Query: 61 taaataatctttcccccttctcaacttgtctcccaggtagtgtacctgtcaccattaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taaataatctttcccccttctcaacttgtctcccaggtagtgtacctgtcaccattaata 542
Query: 121 actcttctgcagttccctggcgatttgacccatcagttgtcactcacagaggaacagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 actcttctgcagttccctggcgatttgacccatcagttgtcactcacagaggaacagtgt 482
Query: 181 tctggcttgctattggagtttatgcaggtttcttcagctcttcagtcactttggcagcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 tctggcttgctattggagtttatgcaggtttcttcagctcttcagtcacttcggcagcca 422
Query: 241 tatactgtgggaagttgtattgatgggcttcacacatggtgctaaatgctttatcacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatactgtgggaagttgtattgatgggcttcacacatggtgctaaatgctttatcacatg 362
Query: 301 ctttgaggaatgtgccattatatattttt-aagtcttatatgatatgatttgccattagg 359
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct: 361 ctttgaggaatgtgccattatgtattttttaagtcgtatatgatatgatttgccattagg 302
Query: 360 actcagactataaatacagggacaagtgtggttaagatgacccacaacagatacagcctt 419
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 actcagactacaaatacagggacaagtgtggttaagatgacccacaacagatacagccgt 242
Query: 420 tctagatttttgatgctatgcctgcacctaattatcatggt 460
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctagatttttgatgctatgcctgcacctaattatcatggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space: 382950
Effective search space used: 382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
