Query= MSMg01no368_d10.b1 MSMg01no368_d10.b1 CHROMAT_FILE:
MSMg01no368_d10.b1 PHD_FILE: MSMg01no368_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:36 2005
(545 letters)
>mm_chr4_98082014_98082959
Length = 946
Score = 913 bits (472), Expect = 0.0
Identities = 520/538 (96%), Gaps = 7/538 (1%)
Strand = Plus / Minus
Query: 8 ttcaaggattacctagactacagggaaccctgcgcatgagt--atcagtgtgagacgag- 64
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 742 ttcaaggaaaacctagactacagggaaccctgcgcatgagtaaatcagtgtgagacgagg 683
Query: 65 -gagaaagcatttacaccagagggaaatgtaagagcatagctcagcaagacaacagaatg 123
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 682 agagaaagcatttacaccagagggaaatgtaagagcacagctcagcaagacaactgaatg 623
Query: 124 aggcagactggagagaataacaaggctaaagcaacggcttaggaaaattactgttagaac 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagcagactggagagaataacaaggctaaagcaacggcttaggaaaattactgttagaac 563
Query: 184 tgcgacgaaccaaaggttaacaatacgactagaaagcacgtggaaagagtaaaagtcccg 243
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtgacgaaccaaaggttaacaatacgactagaaagcacgtggaaagagtaaaagtcccg 503
Query: 244 agtaaacacaaactgtctgacaagggcagagctatgtcaaggacccatgccacagctcat 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agtgaacacaaactgtctgacaagggcagagctatgtcaaggacccatgccacagctcat 443
Query: 304 gaagtggcaaagcctttaccaggctcagaaaaatggcaaagacttcccccggtccatgtg 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 gaagtggcaaagcctttaccaggctcagaaaaatggcaaagacttcccctggtccatgtg 383
Query: 364 cagacattggtagtgtgtgcacaaatgtccaccatagctttctccaaagttcctccacag 423
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 382 cagacattggtagtgtgtgcagaaatgtccaccatagctttctccaaagttcctc--cag 325
Query: 424 atactgctcctacagattagctaaaccttcctcctggttcagctgtacgcaataaacccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 atactgctcctacagattagctaaaccttcctcctggttcagctgtacgcaataagcccc 265
Query: 484 gcctcctggttcagctgtatgcaataagccccgcctcctggttcagctgtacgcaata 541
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 264 gcctcctggttcagctgtatgcaat-agccccgcctcctggttcagctgtatgcaata 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space: 500760
Effective search space used: 500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_d10.g1 MSMg01no368_d10.g1 CHROMAT_FILE:
MSMg01no368_d10.g1 PHD_FILE: MSMg01no368_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:36 2005
(496 letters)
>mm_chr4_97902073_97902968
Length = 896
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%)
Strand = Plus / Plus
Query: 1 actgacggtgaatgatctttttgaggtgagaaaccacaactctgaaggagccacggtgta 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 actgacggtgaatgatctttttgaggtgagaaaccacatctctgaaggagccacggtgta 260
Query: 61 tggagaaggaaccagtgctcaaaaatatcaacacatttacctgcagccacggcggggcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagaaggaaccagtgctcaaaaatatcaacacatttacctgcagccacggcggggcgg 320
Query: 121 agcggggcaggggtgctggatcagctcgagtctacagctaaatatattcctctattcctt 180
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 agtggggcaggggtgctggatcagctagagtctacagctaaatatattcctctattcctt 380
Query: 181 ccctgcattctccataaaggagggagctagctggaaggaagggcagagtttaaatgcgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgcattctccataaaggagggagctagctggaaggaagggcagagtttaaatgcgtt 440
Query: 241 cctacaagtgaaaccccaggaagctgaggagttgccccctcggtgcagagtctgatttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctacaagtgaaaccccaggaagctgaggagttgccccctcggtgcagagtctgatttaa 500
Query: 301 atggcctccctgtgataggccactcctgagacagaactaaggaagaaagggggcaatgcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggcctccctgtgataggccactcctgagacagaactaaggaagaaagggggcaatgcg 560
Query: 361 cgtcgcagtgaactcaaaatccaaaccctccaccctcggtcaaaggccctatcaacccga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtcgcagtgaactcaaaatccaaaccctccaccctcggtcaaaggccctatcaacccga 620
Query: 421 tgggagttttgaccttgtgcttaaaatcccaggagtgtgagttaaggaggtataagtctc 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 tgggagttttgaccttgtgcttaaaatcccaggagtgtgagttaaggcggtataagtctc 680
Query: 481 ccgtttcttcttttag 496
||||||||||||||||
Sbjct: 681 ccgtttcttcttttag 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
