Query= MSMg01no368_h09.b1 MSMg01no368_h09.b1 CHROMAT_FILE:
MSMg01no368_h09.b1 PHD_FILE: MSMg01no368_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:54 2005
(276 letters)
>mm_chr4_50928686_50929366
Length = 681
Score = 393 bits (203), Expect = e-114
Identities = 266/307 (86%), Gaps = 35/307 (11%)
Strand = Plus / Plus
Query: 5 gaattccaggatatccaaggctacacagagaaatcttgtctag-------aaacaacaac 57
||||||||||| | ||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 175 gaattccaggagagccaaggctacacagagaaatcttgtctagaaaaaaaaaaaaacaac 234
Query: 58 aacaacaacaaaaacaacaaaaaagaaaaacaccccccc----aaaaaaaac-------- 105
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 235 aacaacaacaaaaacaacaaaaaagaaaaacacccccccccaaaaaaaaaacaaaaaaag 294
Query: 106 ----aaaaacaaaaa-------caaaacacaaaacaaagaaaatgtgctcaatgatgaga 154
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaaaaaaaacaaaaaacaaaaccaaaacacaaaacaaagaaaatgtgctcaatgatgaga 354
Query: 155 ttaagcacagctgcaataaattaataaaaaagtctctggcatgaactccaaatt-----t 209
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 355 ttaagcacagctgcaataaattaataaaaaagtctctggcatgaactccaaactgtatgt 414
Query: 210 cttgtaaggtgatctctatgcctctgtctctatatgctattgaagttggcaggagtgtgg 269
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 415 cttctaaggtgatctctatgcctctgtctctatatgctattgaagttagcaggagtgtgg 474
Query: 270 tgtgggc 276
|||||||
Sbjct: 475 tgtgggc 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 681
Length adjustment: 9
Effective length of query: 267
Effective length of database: 672
Effective search space: 179424
Effective search space used: 179424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no368_h09.g1 MSMg01no368_h09.g1 CHROMAT_FILE:
MSMg01no368_h09.g1 PHD_FILE: MSMg01no368_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:54 2005
(523 letters)
>mm_chr4_51059550_51060472
Length = 923
Score = 936 bits (484), Expect = 0.0
Identities = 513/523 (98%)
Strand = Plus / Minus
Query: 1 acttttaaaaaataagattggggcccagggcagagcctgtactccagataccatcccaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acttttaaaaaataagattggggcccagggcagagcctgtactccagataccatcccaca 479
Query: 61 caaagagacagcttgactctcaggaactctttcataatcaggcttatgaataagatacac 120
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 478 caaagagacagcttgactcccaggaactctttcataatcaggcttacgaataagatacac 419
Query: 121 cccaccctgaaaccttgcctaaaggggaccccagtggggtcaagtataggctagtcctat 180
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 418 cctaccctgaaaccttgcctaacggggaccccagtggggtcaagtataggctagtcctat 359
Query: 181 actccctgccctgccagagacacattttccttctagcccacaacttgtcctggaaaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 actccctgccctgccagagacacattttccttctagcccacaacttgtcctggaaaagag 299
Query: 241 ctagcactgtagacacccttcaatacccagagacatcttgactcccaggaggtccatcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctagcactgtagacacccttcaatacccagagacatcttgactcccaggaggtccatcac 239
Query: 301 aatcagccttacaggctcacaagaggaacagaatcaagtcagagacagcaaggcaaatta 360
||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct: 238 aatcagccttacaggctcacaagaggaacaggatcaagtcagagatagaaaggcaaatta 179
Query: 361 acacctgagataaccagaatgtaagaggcaagcacaagaacataagaaacagaaaccaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acacctgagataaccagaatgtaagaggcaagcacaagaacataagaaacagaaaccaat 119
Query: 421 gatacctggtaccatgagaacccagttctcccaccacagtaagcactggattccctaaca 480
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 118 gatacctggtaccatgagaacccagttctcccaccacattaagccctggattccctaaca 59
Query: 481 tacctggaaagcaagactctgatctnaaattccattttatgaa 523
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 58 tacctggaaagcaagactctgatctaaaattccattttatgaa 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
