Query= MSMg01no368_j14.b1 MSMg01no368_j14.b1 CHROMAT_FILE:
MSMg01no368_j14.b1 PHD_FILE: MSMg01no368_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:05 2005
(571 letters)
>mm_chr4_56165217_56166187
Length = 971
Score = 1044 bits (540), Expect = 0.0
Identities = 561/568 (98%), Gaps = 2/568 (0%)
Strand = Plus / Minus
Query: 5 gaattctttcc-cttactatcgtttgattatattctgttccctcccctaacttctaactc 63
||||||||||| | ||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 959 gaattctttccacatactatcgtttgattatattctgttccctcctctaaattctaactc 900
Query: 64 ttcccagatcctacccatccaactcatggtctccctcctactttcctctctctctttcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ttcccagatcctacccatccaactcatggtctccctcctactttcctctctctctttcag 840
Query: 124 ggatctaaaacttaaaatcaaaatagacaaacaaaat-aaaaaatcagagaaaaaataca 182
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 839 ggatctaaaacttaaaatcaaaatagacaaacaaaataaaaaaatcagagaaaaaataca 780
Query: 183 aaataaaaagcacacctaaaacccatcgtgtacattttgttttggccaactacttttggt 242
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 779 aaataaaaagcacacctaaaacccatcgtgtacgttttgttttggccaactacttttggg 720
Query: 243 tgtggggcttgcctgtcgtccaggatattcttgacctcagactatcatgtacatgatgag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgtggggcttgcctgtcgtccaggatattcttgacctcagactatcatgtacatgatgag 660
Query: 303 acaggaggattgatctatcctttggaaaaacttgctggctgatggtatattaacccagct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 acaggaggattgatctatcctttggaaaaacttgctggctgatggtatattaacccagct 600
Query: 363 ttctgattccagtgtctgctggagaaaagagctgtgatactaaatccaggaaaggtatag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttctgattccagtgtctgctggagaaaagagctgtgatactaaatccaggaaaggtatag 540
Query: 423 ctgagatcacatcaaggaagaagggtgaagaaaattgaaggaatgcagcatattgggact 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctgagatcacatcaaggaagaagggtgaagaaaattgaaggaatgcagcatattgggact 480
Query: 483 caagaggaagacgacagagttctgctagtacgatgttgtctggaggaagagcagggaagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 caagaggaagacgacagagttctgctagtacgatgttgtctggaggaagagcagggaagc 420
Query: 543 aacctggagggatggaaaccctcatctt 570
||||||||||||||||||||||||||||
Sbjct: 419 aacctggagggatggaaaccctcatctt 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_j14.g1 MSMg01no368_j14.g1 CHROMAT_FILE:
MSMg01no368_j14.g1 PHD_FILE: MSMg01no368_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:05 2005
(496 letters)
>mm_chr4_56018917_56019814
Length = 898
Score = 917 bits (474), Expect = 0.0
Identities = 492/498 (98%), Gaps = 2/498 (0%)
Strand = Plus / Plus
Query: 1 cacagttgagttactcctgcatgaacacttaacatcctgggctcctgagcctt-ccacag 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cacagttgagttactcctgcatgaacacttaacatcctgggctcctgagcctttccacag 260
Query: 60 cctcattgtccttgtctggagctgtgtcactgaaatcatacccacgcacagtcttacaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcattgtccttgtctggagctgtgtcactgaaatcatacccacgcacagtcttacaaa 320
Query: 120 gctgatgaaataggacacgtgaagcagctaacagagccctagccttctgcaagagctcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgatgaaataggacacgtgaagcagctaacagagccctagccttctgcaagagctcag 380
Query: 180 taaacgttagtgtgaggataatagtgatggctgacatgatactgtcatgaacaactaaag 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 taaacgttagtgtgaggataatagtgatggctgacatgatactgttatgaacaactaaag 440
Query: 240 tagggttaagctgcggttatgagctcatggaggtaccacatggaaggagggattcctgtt 299
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagggggaagctgcggttatgagctcatggaggtaccacatggaaggagggattcctgtt 500
Query: 300 gggatacactagttgagtaagaggacagcaggca-gaaaggcctgtgtagaaaggagttg 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 gggatacactagttgagtaagaggacagcaggcaagaaaggcctgtgtagaaaggagttg 560
Query: 359 acaaggaagtgtaggattgtcttgcttagaaaacaataataacctaaagtatatctgtgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaggaagtgtaggattgtcttgcttagaaaacaataataacctaaagtatatctgtgt 620
Query: 419 ggaggctgagtttcttctaaagcatctataggtgattggaaggtaaaggtattcttcatg 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 ggaggctgagtttcttctaaagcatctatagatgattggaaggtaaaggtattcttcatg 680
Query: 479 ggcttaaggaaccttgaa 496
||||||||||||||||||
Sbjct: 681 ggcttaaggaaccttgaa 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space: 431568
Effective search space used: 431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
