BAC Information

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BAC

Clone NameMSMg01-368L03
Chromosome4 (Build37)
Map Location 14,632,198 - 14,809,009
singlet/doubletdoublet
Overlap gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7
Downstream geneOTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095, LOC633695, Calb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368L03.T7 (MSMg01no368_l03.b1)MSMg01-368L03.TJ (MSMg01no368_l03.g1)
ACCAG475859AG475860
length721743
length of high quality
(start - end)		422 (42 - 463)577 (66 - 642)
definitionCHROMAT_FILE: MSMg01no368_l03.b1 PHD_FILE: MSMg01no368_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:12 2005CHROMAT_FILE: MSMg01no368_l03.g1 PHD_FILE: MSMg01no368_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,632,198 - 14,632,615)(14,808,434 - 14,809,009)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTACATATTTCCGTAGGCCTGCCCCTTGCTATGCCCATGCTTCCCAGAC
AACAAGCATCTTGGAAGCCCACCATCACAGAGCAAAGCATCCTGGGCATG
TGTAGAACCTTCTGAGTGGGGAAATGGGCACGGTAAACAGACAGAAAAAA
TCTGAAAGCACTAATACTATCATGAATTCTACCAGCAGAGGCTTCCTGCC
ACCTTTTCTCTGTTTCTGAGGAGCAGTTTGTAATTCAAGTTAAAATGCTT
GTTTTAGAGGTATGCTATTAGCTAATTAGACAAATTGGGTGGTTAGCTCT
AATATACAGAAAACTCATAGACAAGGACTCATTTTTCAAATATAAACAGA
AGAATTTTATGGAACACACAGATCCATAAGTCATACGATTGCTTTTACCA
TTTATGACTCTGGACTCAAACGTTGATTTTCAATTCACACTCGACAACTA
ATATGTCAGNCCCATTAATTTAAATTCCCCCCTTGAAACCCCAAAAATTT
AACTTTGGGAAGAAAAAAAAAATTATGGCTTCTGAAAAAAAAAAAAATTT
TTTTTATTTGGGGAAAAAGGGTGGGTAACCCCCCCCCGGGGGAAATATAA
TATGGGGTATAAACCCAAAAAAAATTTTTTTTTAAAAAACCCTTTCTAAA
AAAAAAAAAAATTTTTGTTTT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTTTCTTCACTCCTGCTCTCACTGTATCCAGCCC
TTGACAAAGATGGATACATAACAGAAAAATGACATCACATTAAAGTCTGA
GATGGTCTAGGATCCTATTACAGAAGGAGGGCCCCCGAGAAGAAGGCCAG
CATTATTCTCTGCCCCTCACCCCGTTTCCACTTTCTTCACGGTCTTTGGG
AGAATGTGGCTTAAAGACAAAGCCAGCTGAGCTCTGCTTTCAGGACCTCT
GCTTTCAATGGCAACGCTCTCCATCCAGCTCAGTACAGAGAAGAGGAAAT
ACCATTCTTTATTCCTCCCCTTCTCAGAATCAAAGAAATGGGTCTCCCAG
AACCACGCCACTGTTAGAAGGAGGTATCTGGCACACATCAGATTAAGACA
GTGTGTGTTAGTGACCAGGTCACCCTAAAATCTAAACACATGTTCAGTAT
TGTGACTGTGGAGCTGTGTAGACACCCTCTGACACTACAAGCTGGCTGCA
GGTGCTCTGTTAGTAGATGCTGGAGAAAACCTACCAAGACAGAAGAGAGA
GGCTTTTTTTTTTGTCTCTTCTGTTTGCTTCCTATGAGCTTTCCAACTAC
CTGCTAGTTTTCTAAATGTCACCCTTGGAATACTCTGCCACCATGGCTAA
AGCACTTTCCCCTGGCAACCCTGAATCCCGGTTTCTGTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_l03.b1 MSMg01no368_l03.b1 CHROMAT_FILE:
MSMg01no368_l03.b1 PHD_FILE: MSMg01no368_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:12 2005
         (422 letters)



>mm_chr4_14631994_14632815
          Length = 822

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctacatatttccgtaggcctgccccttgctatgcccatgcttcccagacaacaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacatatttctgtaggcctgccccttgctatgcccatgcttcccagacaacaa 264

                                                                       
Query: 65  gcatcttggaagcccaccatcacagagcaaagcatcctgggcatgtgtagaaccttctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatcttggaagcccaccatcacagagcaaagcatcctgggcatgtgtagaaccttctga 324

                                                                       
Query: 125 gtggggaaatgggcacggtaaacagacagaaaaaatctgaaagcactaatactatcatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtggggaaatgggcacggtaaacagacagaaaaaatctgaaagcactaatactatcatga 384

                                                                       
Query: 185 attctaccagcagaggcttcctgccaccttttctctgtttctgaggagcagtttgtaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attctaccagcagaggcttcctgccaccttttctctgtttctgaggagcagtttgtaatt 444

                                                                       
Query: 245 caagttaaaatgcttgttttagaggtatgctattagctaattagacaaattgggtggtta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagttaaaatgcttgttttagaggtatgctattagctaattagacaaattgggtggtta 504

                                                                       
Query: 305 gctctaatatacagaaaactcatagacaaggactcatttttcaaatataaacagaagaat 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttctaatatacagaaaactcatagacaaggactcatttttcaaatataaacagaagaat 564

                                                                     
Query: 365 tttatggaacacacagatccataagtcatacgattgcttttaccatttatgactctgg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttatggaacacacagatccataagtcatacgattgcttttaccatttatgactctgg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_l03.g1 MSMg01no368_l03.g1 CHROMAT_FILE:
MSMg01no368_l03.g1 PHD_FILE: MSMg01no368_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:12 2005
         (577 letters)



>mm_chr4_14808234_14809210
          Length = 977

 Score = 1075 bits (556), Expect = 0.0
 Identities = 571/576 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttcttcactcctgctctcactgtatccagcccttgacaaagatggatacataacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 actttcttcactcctgctctcactgtatccagcccttgacaaagatggatacataacaga 717

                                                                       
Query: 61  aaaatgacatcacattaaagtctgagatggtctaggatcctattacagaaggagggcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aaaatgacatcacattaaagtctgagatggtctaggatcctattacagaaggagggcccc 657

                                                                       
Query: 121 cgagaagaaggccagcattattctctgcccctcaccccgtttccactttcttcacggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cgagaagaaggccagcattattctctgcccctcaccccgtttccactttcttcacggtct 597

                                                                       
Query: 181 ttgggagaatgtggcttaaagacaaagccagctgagctctgctttcaggacctctgcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttgggagaatgtggcttaaagacaaagccagctgagctctgctttcaggacctctgcttt 537

                                                                       
Query: 241 caatggcaacgctctccatccagctcagtacagagaagaggaaataccattctttattcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 536 caatggcaacgctctccatccagctcagtacagagaagaggaaataccattcttaattcc 477

                                                                       
Query: 301 tccccttctcagaatcaaagaaatgggtctcccagaaccacgccactgttagaaggaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tccccttctcagaatcaaagaaatgggtctcccagaaccacgccactgttagaaggaggt 417

                                                                       
Query: 361 atctggcacacatcagattaagacagtgtgtgttagtgaccaggtcaccctaaaatctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 416 atctggcacacatcagattaagacagtgtgtgttagtgaccaggtcaccctgaaatctaa 357

                                                                       
Query: 421 acacatgttcagtattgtgactgtggagctgtgtagacaccctctgacactacaagctgg 480
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 356 acacatgttcagtattgtgcctgtggagctctgtagacaccctctgacactacaagctgg 297

                                                                       
Query: 481 ctgcaggtgctctgttagtagatgctggagaaaacctaccaagacagaagagagaggctt 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctgtaggtgctctgttagtagatgctggagaaaacctaccaagacagaagagagaggctt 237

                                               
Query: 541 ttttttttgtctcttctgtttgcttcctatgagctt 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttttttttgtctcttctgtttgcttcctatgagctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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