Query= MSMg01no368_m20.b1 MSMg01no368_m20.b1 CHROMAT_FILE:
MSMg01no368_m20.b1 PHD_FILE: MSMg01no368_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:21 2005
(555 letters)
>mm_chr4_111297870_111298824
Length = 955
Score = 1042 bits (539), Expect = 0.0
Identities = 552/557 (99%), Gaps = 2/557 (0%)
Strand = Plus / Minus
Query: 1 gtctcttaactctcatccctgttttttcaattccagattagggagagagtgggttc--ca 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 822 gtctcttaactctcatccctgttttttcaattccagattagggagagagtgggttccaca 763
Query: 59 catgtgtataactgagaccaaatgtgaaatctcggccaccccgaactccagcctcagcca 118
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 762 catgtgtataactgagaccaaatgtgaaatctcagccaccccgaactccagcctcagcca 703
Query: 119 agctccagcactgtcttaatgctgacactgattacactgtgactttgtcctcatgaaata 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agctccagcactgtcttaatgctgacactgattacactgtgactttgtcctcatgaaata 643
Query: 179 atttatttaatttaaaaaacaaacaaacaaacaaaaagctgtgctggtgagaacagattt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atttatttaatttaaaaaacaaacaaacaaacaaaaagctgtgctggtgagaacagattt 583
Query: 239 ggaagtctaatcccattgaaataactgagtactccaaacacatagctaagaagactacta 298
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggaagtctaatcccagcgaaataactgagtactccaaacacatagctaagaagactacta 523
Query: 299 tttcaaaaccacaagagccccctaagaatctcagagacacctggtccaagcacattgcct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttcaaaaccacaagagccccctaagaatctcagagacacctggtccaagcacattgcct 463
Query: 359 ctagtctgatagcccagaaatgaataacttgatttcacctaatacattacttggttagaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctagtctgatagcccagaaatgaataacttgatttcacctaatacattacttggttagaa 403
Query: 419 agagtaacaatcgtggtgcaatttactgagtgcctactacgttcttggcaattgaacagg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agagtaacaatcgtggtgcaatttactgagtgcctactacgttcttggcaattgaacagg 343
Query: 479 cactggagtatatttcccagtgtttgcatctactcaaaacacccctgtgaggtaagtatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cactggagtatatttcccagtgtttgcatctactcaaaacacccctgtgaggtaagtatt 283
Query: 539 agaatgacatcatggca 555
|||||||||||||||||
Sbjct: 282 agaatgacatcatggca 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_m20.g1 MSMg01no368_m20.g1 CHROMAT_FILE:
MSMg01no368_m20.g1 PHD_FILE: MSMg01no368_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:21 2005
(500 letters)
>mm_chr4_111109830_111110729
Length = 900
Score = 959 bits (496), Expect = 0.0
Identities = 496/496 (100%)
Strand = Plus / Plus
Query: 5 tagggtggaatcctggggctccataagaaccagcaagacataagaggttgtcctcatttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tagggtggaatcctggggctccataagaaccagcaagacataagaggttgtcctcatttt 264
Query: 65 gctagtgaagaagcaggaccacattggtcctgcacatctctctagagttctactctctag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctagtgaagaagcaggaccacattggtcctgcacatctctctagagttctactctctag 324
Query: 125 cactctgacttttttgtcacccacatgggtgtgacttcaccatccttcataaaggaccat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactctgacttttttgtcacccacatgggtgtgacttcaccatccttcataaaggaccat 384
Query: 185 ctgttccttgtctgtgatcttagccaggaaaacaaccctttctgacaagacatatccaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgttccttgtctgtgatcttagccaggaaaacaaccctttctgacaagacatatccaca 444
Query: 245 cgctgctcccacgccaaggtcgtttatttcagtatttgttacagtgtcaagattaaacaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgctgctcccacgccaaggtcgtttatttcagtatttgttacagtgtcaagattaaacaa 504
Query: 305 gaaggcacttggtagagtctggctgtatgtccagcacagtccgtgttcagtaaacgtcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaaggcacttggtagagtctggctgtatgtccagcacagtccgtgttcagtaaacgtcag 564
Query: 365 tctctaatcccctgcagagaatcagtgctgaggattctaaagcaccagggagttactgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctctaatcccctgcagagaatcagtgctgaggattctaaagcaccagggagttactgct 624
Query: 425 tacaagacacatgctgatttatgggattattcattcatttattctttcttctttaacaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacaagacacatgctgatttatgggattattcattcatttattctttcttctttaacaaa 684
Query: 485 tgcttattgagattgt 500
||||||||||||||||
Sbjct: 685 tgcttattgagattgt 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
