Query= MSMg01no369_a13.b1 MSMg01no369_a13.b1 CHROMAT_FILE:
MSMg01no369_a13.b1 PHD_FILE: MSMg01no369_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:39 2005
(530 letters)
>mm_chr4_98713006_98713935
Length = 930
Score = 919 bits (475), Expect = 0.0
Identities = 493/499 (98%)
Strand = Plus / Minus
Query: 4 ggaattctttgttatcttttatattttctaaaattcagttgaaatatcaccttctgaagg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggaattctttgttatattttatattttctaaaattcagttgaaatatcaccttctgaagg 440
Query: 64 tataatatggggacttgttaaccccattttcataaccttgaacggcacagttgaaaccaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tataatatggggacttgttaaccccattttcataaccttgaacggcacagttgaaaccaa 380
Query: 124 ttgagtaattttgccctaggtaatttgcactcacggagaatactttggactttgctaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgagtaattttgccctaggtaatttgcactcacggagaatactttggactttgctaaaa 320
Query: 184 gaggcaattgtttgatgactcagttttcaaaactgcagtgttagataatcactcagtatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaggcaattgtttgatgactcagttttcaaaactgcagtgttagataatcactcagtatg 260
Query: 244 cactcagaaatgcgttgtttgtgggtgttagtgatgcagaaaaaaaacaaaaagaaaacc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cactcagaaatgcgttgtttgtgggtgttagtgatgcagaaaaaaaacaaaaagaaaacc 200
Query: 304 aaccaatcaatcaaccaaccaaccaaccaaacaaacaaaaaagccatgaggtaatactat 363
|||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct: 199 aaccaatcaatcaaccaaataaacaaacaaacaaacaaaaaagccatgaggtaatactat 140
Query: 364 tattgtgtacagaaggtaggatatatagtaatataatttttaataagttgtataaagtag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 139 tattgtgtacagaaggtaggatatatagtaatataatttttaataagttgtatcaagtag 80
Query: 424 gaatttaataaatattggctaatgaaaccatatctacaaacatttgagtaaactgattgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gaatttaataaatattggctaatgaaaccatatctacaaacatttgagtaaactgattgg 20
Query: 484 cagctgcctactttctagg 502
|||||||||||||||||||
Sbjct: 19 cagctgcctactttctagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_a13.g1 MSMg01no369_a13.g1 CHROMAT_FILE:
MSMg01no369_a13.g1 PHD_FILE: MSMg01no369_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:39 2005
(438 letters)
>mm_chr4_98532394_98533231
Length = 838
Score = 600 bits (310), Expect = e-176
Identities = 421/494 (85%), Gaps = 59/494 (11%)
Strand = Plus / Plus
Query: 1 cagggccacagcctaggt-----tggagcttttcaaagatcccttcttcgcaaagccctg 55
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 146 cagggccacagcctaggtctcgttggagcttttcaaaggtcccttcttcgcaaagccctg 205
Query: 56 aaattcctgacatgtactaaatggggtt--------gga--------------------- 86
|||||||||||||||||||||||||||| |||
Sbjct: 206 aaattcctgacatgtactaaatggggtttggggtggggagatccatcatggtaagtaact 265
Query: 87 ---------------------agacttgcaatgaaacaagcgttttctgaccaggaagaa 125
|||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tagagaagaaaaaaaaaaaaaagacttgcaatgaaacaagcgttttctgaccaggaagaa 325
Query: 126 taacagagacaaacagagccccagatggttttatttgctgagctgtgtgtctgttccgca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taacagagacaaacagagccccagatggttttatttgctgagctgtgtgtctgttccgca 385
Query: 186 cagtttcctgagctccacgctctttttgttaatttgcatttgaaccaaaccggattttta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cagtttcctgagctccacgctctttttgttaatttgcatttgaaccaaaccggattttta 445
Query: 246 tactagagccaagacccagggtgaggaagttgcagtaataaaaataagttaggtgttatg 305
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tacaagagccaagacccagggtgaggaagttgcagtaataaaaataagttaggtgttatg 505
Query: 306 taatgtgtgtaaaccatatatatatgtatatctatctatctatctgtctgtctgtctgtc 365
||||||||||||||||||||||||| |||| ||| | | | | ||| ||| ||| |||
Sbjct: 506 taatgtgtgtaaaccatatatatat--atatgtatgtgtgtgtgtgtgtgtgtgtgtgtg 563
Query: 366 tgtctgtgtatgtgt--atgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgta 423
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtgtgtgtgtgtgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgta 623
Query: 424 tgtgtatgtgtatg 437
||||||||||||||
Sbjct: 624 tgtgtatgtgtatg 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
