BAC Information

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BAC

Clone NameMSMg01-369E07
Chromosome4 (Build37)
Map Location 133,172,679 - 133,172,924
singlet/doubletsinglet
Overlap geneZdhhc18
Upstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn
Downstream geneLOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369E07.T7 (MSMg01no369_e07.b1)MSMg01-369E07.TJ (MSMg01no369_e07.g1)
ACCAG476297AG476298
length877786
length of high quality
(start - end)
---246 (65 - 310)
definitionCHROMAT_FILE: MSMg01no369_e07.b1 PHD_FILE: MSMg01no369_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:57 2005CHROMAT_FILE: MSMg01no369_e07.g1 PHD_FILE: MSMg01no369_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXCGAAACGATGCGCGGAATTCTATA
GCTTCAGACATATTTCTTTGGGGGGGATTGGGGTTGTTTTTGATTTTCCT
GACTCGTTTTATACAAGTAAAAGTCTTATATAGACAGATATCCACTCACC
TTTATTATAGGGAGAGAGATAGTAAATATAAATAGTCAGACTGTAGCTGA
AAAAAAAGCGCCCGCGAGATATTCCAGCGATTTGAGTCCCGGACAGTTTA
TAATTCATCACCCCCATTTACAGAAATTGCCCACCCGAACAACCATCAAA
AACATAACAAAACAACCCTTTTTATATAACAAATCATATACCACGCACTC
CCCCATATATTTTTTGTGTAATCCCACCTTTTCCTGACCACACTTTTCAC
CAATCTAAACAACTCCTTTGTCTCCACCCATTTATTATACATTCTCAATA
TAATACCAGTACATTCTTTTTACGTTCTTTCATTCTTTGTTATTACTACC
CTCAATCTATATTAGTCTGTTTTCTCTAATTATCATTATTATCTTCCTTC
ATTCACTCATTTACTCAACAACATAATATTTATACATTACATTTCTATCT
AATTATATAACAAACATATACTTTATTTACACATACCTACAAATATATCA
TTTACGGGGCGTGGACAAAATAAATATATTAACTCTAGTCTATTGCCCTA
TCTTTAATATACTAAGAAATACTAATTATCCTTTCGTTATTTCCTTTTTC
TTTGCCCACTACATTACTCTTACATCCCTTTATTTCCCACCCCCTTTTAT
TACATCTAAATCCCACTATTTAATCGTATCCTTTATTTCCCCTATTTATT
CTACAATTACCCGTAACCTTGTCCATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGGCTTCCCATGTTTACAATGCAACTAATCTCCTGA
GCATCTCCTCTCTAGACCAGGAAGCGGGAGAAGGCAGGGGCTAGGGGAGC
CAAGGAGGCTGACACAATGGAACTCAGCCTTCGTTGTCTAGTTTGTAAAA
TAGGAATAATGAGCAGAATGGTATGGCCAGGCCGGCTTTAAACTATGTAG
CCGACGATGACCCCCCGAATCCTCTCTCACCTCTCACACGATGGAATTAC
AGACGTGTGACTATTCTCGCTGGGTTCTGTAAGGTGCTGGCGACTGAACC
CTATGCTTTAACAATGCTGGACACTCGACCTTGTCCTGCTTGCTGTGTGA
GACAGGGCATTACTTATAGGTTAACCTGGTCTTCATCTTAAAATCCTAAC
CTTCTCTCAGGCAGACACGTCTGTTTTGCTACTGACCACTAGTTGTATAG
GTAAGATCATCTTATTGCCCTATTGTTTAGAGTTGCTCCTCTGTCTTTGT
GACTGTCTGGGTGTCACTAGTTCTTTCTAGGATTTGATCTTTTCCCACTA
TGGTTCTTAATTCTCTGGTTTTGGCCTTTCCCCTTTGTTTTTCTACCCCT
AATACCCTTTTTTACTGTTTTTTTCTCTCTTTTTTTCCTTCCTCTTTTGT
TTTTTTTCGTTTTTTTTCTTTTTTCCTCCTCCGTTTATCTCAATTTCCTC
TCCTCTCTCCTTTCACTCATTTCTTTTTCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_e07.g1 MSMg01no369_e07.g1 CHROMAT_FILE:
MSMg01no369_e07.g1 PHD_FILE: MSMg01no369_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:57 2005
         (246 letters)



>mm_chr4_133172479_133173124
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcttcccatgtttacaatgcaactaatctcctgagcatctcctctctagaccaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcttcccatgtttacaatgcaactaatctcctgagcatctcctctctagaccaggaag 260

                                                                       
Query: 61  cgggagaaggcaggggctaggggagccaaggaggctgacacaatggaactcagccttcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggagaaggcaggggctaggggagccaaggaggctgacacaatggaactcagccttcgt 320

                                                                       
Query: 121 tgtctagtttgtaaaataggaataatgagcagaatggtatggccaggccggctttaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctagtttgtaaaataggaataatgagcagaatggtatggccaggccggctttaaact 380

                                                                       
Query: 181 atgtagccgacgatgaccccccgaatcctctctcacctctcacacgatggaattacagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtagccgacgatgaccccccgaatcctctctcacctctcacacgatggaattacagac 440

                 
Query: 241 gtgtga 246
           ||||||
Sbjct: 441 gtgtga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)