BAC Information

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BAC

Clone NameMSMg01-369G14
Chromosome4 (Build37)
Map Location 132,333,600 - 132,334,022
singlet/doubletsinglet
Overlap geneRpa2
Upstream genePtpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b
Downstream geneBC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369G14.T7 (MSMg01no369_g14.b1)MSMg01-369G14.TJ (MSMg01no369_g14.g1)
ACCAG476406AG476407
length749745
length of high quality
(start - end)		499 (42 - 540)422 (75 - 496)
definitionCHROMAT_FILE: MSMg01no369_g14.b1 PHD_FILE: MSMg01no369_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:08 2005CHROMAT_FILE: MSMg01no369_g14.g1 PHD_FILE: MSMg01no369_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATCCTCTTGCCTCTGCCTCCCCAAGTGCTAGACTATAGCACCACAG
AATGTTCCCATGGTTACCATTCACATCACCCCTTTATTGCATATATACGT
AATACGACATTACAAAAAATTATCTTTTAGCCCATGTTTCTCACCCCTTT
AGGCAGTCAGTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA
CACCAGGCTGGCCTCGAACTTAGAAATCCGCCTGCCTCACCTCCCGAGTG
CTGGGATTGAAGGTGTGCGCCACCACGCCCGGCTTAGGCAGTCAGTTCTT
TCTCTGTCTTTTTCTCTCTCCATGTGATGTTCTCGTAGCCAGGTAGGTCC
TGGTGAGGAGGTGGTAAGGAAATCCTTAGGAATGAAGAATATAATGGGAC
TGAAGCTGTCAATGGCCCGAGCCACTTGGGCTTTTAAGGCTGGCTCTTGC
TAACCAAATTTATTCATTTATACTGATGTAACTCTCATTGATGAAAATAT
GCCTGCCTGGCTGCCAGCAAGGACACCTTTCCTAATCAAGACACTGGAGT
ATCTGTGCTTGTAACCTATAAAACCCTTTTAGTGGCGTCCCCTGGGGTTG
GTTATCATGGTTTCACGTCTTTATAATTTTTTTCCGCTTCTACAATAATC
ACCTTTCTCTACCTCTCCTATTTGTCTTATTTTTTTTCTTCCCCCCCCG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGCTAAGAGAAGTACACAAACAAG
TGATGTTTGCTCATTTAGCTATGTTCAAAAGGCGCTGGTTTTAATGTGGG
GATCCCCCCCCTTTTTTTTTCCTTTCAGGCAAGCAGTGGATTTTCTGTGC
AACGAGGGCCACATTTACTCTACTGTGGACGACGATCACTTTAAGTCTAC
AGATGCAGAGTGACTGGAGTTTCCTGGGTGCCTGGAATCTGTCCAGCTGG
GCCTGTGTTCCTCTGTCGGCCCCAGCTCTGCGGGCTTTGGCCAGAGGTTT
CTAGGACAGAACTTTGCTGTAGAAGGTCTCACTCAGCTGAAGTCCTTTTG
GAACTTAGTGCTCTCTGTTTTGTTGCTTGTTGTTTAGAGGTTCAGAGGGA
GATAAACAGTTGAGAAGGAAGTAAACCAGGACTGGATTTCTTGTAAGAAA
TTCCAATAAGCTAGTCAGGACTCCAGGATGGGTGGTCGGAATTGAAAGAG
GAACACTGCCAAGATGTCAGGCCAGGGTTTCAGCTTGCTTGAAAGCGTCT
GTTCTTCAAGGGTTCCTGGTGAAGACAAAACTTGCTAAGGGCAAGGGCCA
AAAAAAAACCTAAAACCCTCTGCCAGTTTTGGGCTGGCCCCCTGGGTCTC
GGGGTTTTATTTTTACAAAATGCCCTTTTCCTTCCCTTTGGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_g14.g1 MSMg01no369_g14.g1 CHROMAT_FILE:
MSMg01no369_g14.g1 PHD_FILE: MSMg01no369_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:08 2005
         (422 letters)



>mm_chr4_132333400_132334222
          Length = 823

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%), Gaps = 1/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagctaagagaagtacacaaacaagtgatgtttgctcatttagctatgttcaaaaggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagctaagagaagtacacaaacaagtgatgtttgctcatttagctatgttcaaaaggcg 260

                                                                       
Query: 61  ctggttttaatgtggggatcccccccc-tttttttttcctttcaggcaagcagtggattt 119
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ctggttttaatgtggggatccccccccctttttttttcctttcaggcaagcagtggattt 320

                                                                       
Query: 120 tctgtgcaacgagggccacatttactctactgtggacgacgatcactttaagtctacaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtgcaacgagggccacatttactctactgtggacgacgatcactttaagtctacaga 380

                                                                       
Query: 180 tgcagagtgactggagtttcctgggtgcctggaatctgtccagctgggcctgtgttcctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagagtgactggagtttcctgggtgcctggaatctgtccagctgggcctgtgttcctc 440

                                                                       
Query: 240 tgtcggccccagctctgcgggctttggccagaggtttctaggacagaactttgctgtaga 299
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgtcggccccagctctgcgggctttggccagaggcttctaggacagaactttgctgtaga 500

                                                                       
Query: 300 aggtctcactcagctgaagtccttttggaacttagtgctctctgttttgttgcttgttgt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtctcactcagctgaagtccttttggaacttagtgctctctgttttgttgcttgttgt 560

                                                                       
Query: 360 ttagaggttcagagggagataaacagttgagaaggaagtaaaccaggactggatttcttg 419
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagaggttcagagggagatagacagttgagaaggaagtaaaccaggactggatttcttg 620

              
Query: 420 taa 422
           |||
Sbjct: 621 taa 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space:   336182
Effective search space used:   336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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