BAC Information

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BAC

Clone NameMSMg01-369P01
Chromosome4 (Build37)
Map Location 36,712,299 - 36,712,493
singlet/doubletsinglet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369P01.T7 (MSMg01no369_p01.b1)MSMg01-369P01.TJ (MSMg01no369_p01.g1)
ACCAG476805AG476806
length7371,049
length of high quality
(start - end)
195 (159 - 353)---
definitionCHROMAT_FILE: MSMg01no369_p01.b1 PHD_FILE: MSMg01no369_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:49 2005CHROMAT_FILE: MSMg01no369_p01.g1 PHD_FILE: MSMg01no369_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAAACGACTACTTTCGGGAGAGGATCCGCGGAATTCCTGTTTACAGTTG
GGTAAAATTATGATATTTGGTTATTATCCTATTCTGATTATCTTTTATTG
AGTACAATACATAATTTTTTTCAGGAAGGTGGTTTTAGCACTGGGCATTC
GGCTTGAATTTTGCAACTCTTTAGCCATGGTGAAGAATGAAACCCAGGAT
TTTTGGTTGGTTCTGGTTGGTTGGTTATTTTATTTGAAAGTTTCAATGAA
GGCATATTCTATTCAGCTAAACACTTTGGAGATCAGTAGCCAAAGAGCAC
TTGGCTTGGTTACGGCACTTCTGGGTTCTCTGAGAATCCAAAGGAAGCAG
GTGGGGTAGGGGCACCCTTGGGGCTGGAGGTGAAAACTTCATTTTACACA
AGAAAAGATGGCACTTTACCCAAATTGTGGCTGAACTGTTTGGAAGTTCT
TGGTCACTTGCACAAAGAATTTTATTTGTCAGATCTACAAAAATATAATG
AACTTTCATACCATTTTATAAGAATTATGCCTGGCTGATACCATATAATA
TTAGGGATTATAATTCAGCTGGCGACCAACTGGACCGATCGGCACTCAAC
CCTAACCTTGGATTATTCTGGGTGCTACACACCTACCGGCTCGCCGGTCC
GGGTTACGCCCCTTCCCCGGGGCCCCTCTCCCGCCCTTACCTTCCGCCCC
CCCTATACCACCTTTCCGTCCCCACCACATATTTTCG
AGTAGGTGTAGGCCCTGGGCGGCGCGGCCTGGTTTCCTAACAGATGTGTA
GGTGAGCCCTATACGAATGTTGCCTCGCGCGAACGTCCTCGATTCTNCCT
CGTGATTTATTCTACTGTGAATCGGCTCGGCGTCAACTAACGTCGCCATC
GCGTTACCATTCTTCACCACAGGTTGCGCCCACCATTCTCGCAATTTACT
TCTCCCTCAGGTGGTGTGCGGGCGTTCGGCCATCTGTCACCTGCACTCAC
CGCCCCATCTCCCACCGCCTCTGCAACTGCGTCTTCTATTCGGAACCATT
ATCTTCCTCTCAAAGCCGCATGTGTGGTGCTTTTCGATGTGGACCGCTTC
TCCCCACCCAATCTTCGACCACCTTATACTTGGTCTCTTTCCTCAACCCC
ACTATCACACCCCTACTACCTATTTTTTATCCACCACCCACTTCGGCTCA
CCCGTCACCCACCCACTATCATCACCTCCCGCTTATTGTCCCCCATTCCA
AACTTTTCCCCGTCTACGCATCCTTTCTACCCATCGCCTCCCACTACTCC
CCTCCTCCCACTTCCCTCATCCCCCCCGCACACACTTCTGATAACTTTCC
ACCTTATCCCCCAACCTTCATTCGCACACTGCGCCTTTATTCTCACTCAC
TGGTTCTCATTTCCTGCACCCACTTTCCTTAGCAACCTTGTTCCTTGCAC
CCCCCTCCCCCCCACCTCTTTCCACCCCATATCGGCCGCACCTTCCCCTC
CGCCCTGGCCCCGCCCCTCTTCTTATCGTCTCCCCTTTCCATCCCACCCT
CTCATCTCCCTCTTCGTCCCTCCCCACCCCCTCTCTCTACTCCTTGTTGT
CTCCGCCACTCCCCCTCGTTTATATCTTTCTCCTCCCCTTTCCCCCCGCC
TCGCCTCTTTCTTTTCTCCTCCCCCTTTTATCCACCAGTTGCGGCCTATC
CACCTCCCCCCCGCCGCCGCCGCCCCGTTCCGTTCCTTCACACCGCTTCA
TCTTTTCTTCTTTTCCCTCTCCCGCGCTCCCACCTTCCCTCCTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_p01.b1 MSMg01no369_p01.b1 CHROMAT_FILE:
MSMg01no369_p01.b1 PHD_FILE: MSMg01no369_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:49 2005
         (195 letters)



>mm_chr4_36712099_36712693
          Length = 595

 Score =  315 bits (163), Expect = 9e-91
 Identities = 187/195 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgcaactctttagccatggtgaagaatgaaacccaggatttttggttggttctggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct: 395 ttttgcaactctttagccatggtgaagaatgaaacccaggatttttgtttgtttctgttt 336

                                                                       
Query: 61  ggttggttattttatttgaaagtttcaatgaaggcatattctattcagctaaacactttg 120
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtttgtttattttatttgaaagtttcaatgaaggcatattctattcagctaaacactttg 276

                                                                       
Query: 121 gagatcagtagccaaagagcacttggcttggttacggcacttctgggttctctgagaatc 180
           ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 275 gagatcagtagccaaagagcacttgccttgtttacgtcacttctgggttctctgagaatc 216

                          
Query: 181 caaaggaagcaggtg 195
           |||||||||||||||
Sbjct: 215 caaaggaagcaggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)