BAC Information

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BAC

Clone NameMSMg01-370H22
Chromosome4 (Build37)
Map Location 133,159,968 - 133,311,573
singlet/doubletdoublet
Overlap geneZdhhc18, LOC545683, Pigv, Arid1a
Upstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn
Downstream geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370H22.T7 (MSMg01no370_h22.b1)MSMg01-370H22.TJ (MSMg01no370_h22.g1)
ACCAG477229AG477230
length802814
length of high quality
(start - end)		402 (36 - 437)355 (67 - 421)
definitionCHROMAT_FILE: MSMg01no370_h22.b1 PHD_FILE: MSMg01no370_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:34 2005CHROMAT_FILE: MSMg01no370_h22.g1 PHD_FILE: MSMg01no370_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,311,179 - 133,311,573)(133,159,968 - 133,160,322)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTCT
GGTTTCTCCTGGCTTGCCCTGTCAGAGCATTCCAGGCCTGCCTGAGAAGA
AAAGGCTGCTGTGGAACTGGTGAGGCCTGTAGGTCTGGACAACTCTGAGC
TTTTCCGCGAATGCCTTGATCTTCACAGATAAACCTGGCCTTAGGGTCTC
TGGTAAACTTCAAGGAGTCTTACACCTTAGGATAGACAGCAGATCTGAGG
GGCATCCGTTTTCTGTGTGACCTGTTAGGCTCTTTTTCTCTCTTTATAGA
GAAAATGGTTTCCATTTTCTGCATCCCTCTTCTGCAGTGGTTTTTGAACA
GAGGTTCTTTCAGTCCCTGGAGCCTCTTCTGTGGGCTGTTTACAGTCTTC
CAAGGCACTTGCCTTTGAAGATTGGGCTACTGGTCATTGTGAGCTAGGTT
CCCTTAAGAAGTGCTAATGGAGCTTGGTTTGCCTGGAGGACTGTCTTTAA
TCCCCAACGCATTCTTAGCCCCCATTTTATATAAAAAGGCTGGTATGAAC
ACGTCTTTATTTTCCAACTATCCGTTGCTGGATTGAATCCGGTGGTGGTT
CCCTCCTATCCACCCTCTTCGCTTTCCCCTCTTTCCTCCCTCTTTTTCTT
GCTTCCTTCAAATTTTAACTTCTTCTATCCCCCATTCTTCTTATATATTT
TTACCCCTTCCTTTCCACTCTCCTTATTATACCGGCGCTCATCTTCCCCC
TCCCTCCCTTACCCTATACCTTCCCCTTTTCCTCCTCTCGATCTCTCCTT
CT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTCAGCCTTGAAGGGCCTTCCTTGGCTCTCAG
CCTGGCCTGGGCTTCCCCAAGTCCTGGGGGCAACTTGGAAACCCCAGGAC
ACTAGGAGTCTGGACGGTGGGGCTTGGCAAACTTGAAACTTCTTCTAAGC
CTACGAAGGGCGTGTTCTCCTCGTGCCTCTTAAGCCAGGAAGCTGGTGGG
GGTTTACAGCTGCAGCTCAGTTCTAGACCCTCTTCCTCCTCCACCGAAGC
CAGGCCTTGACACCCCTGCCAGCTCCGGCCTGCATATCCTGACTCAGTTC
CTGCTTCAGTTGCCTCCCTTTGCCTCCAGGCTTCTACTTCCCAAGTCCAG
AAGCCCAGGCAGGCAGGAGGCAGCAGGCCCTGGCAAAGCATGGGACTCCA
AAGCAGCTTGCCGAGTCAGTAGGAAGGAGACAAAGTCCCGTGTGGGGGGT
GGGCCTGTGGGGCCCCCGCCCGCGATTTGTCCTCGCCTTCTTATCAATCT
GTCCGTCTTTCTTATCTCTCCAGTATTCTCTTTCTACAATTCCCCCACCT
TTCTCCTCCTTTTCCCGTCCCCCCCCTTTCTTCTTTTCTTCCCCCACCTC
CTTTTTTTATTCCTTTCCCCATTTTCCCGTTCTCATTTTTTTTTCTCCTT
TTATCCCCATTTTTCCTTTTCCTTTTCCTTTTTTATTTCACTTTTCTTTC
CTCCATTCTCCTCTCTTATTTCGTTTGTCCATTCTATTTTTTCTTCACTC
TTCTTCCTCTCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_h22.b1 MSMg01no370_h22.b1 CHROMAT_FILE:
MSMg01no370_h22.b1 PHD_FILE: MSMg01no370_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:34 2005
         (402 letters)



>mm_chr4_133310976_133311777
          Length = 802

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctctggtttctcctggcttgccctgtcagagcattccaggcctgcctgagaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggaattccctctggtttctcctggcttgccctgtcagagcattccaggcctgcctgagaa 539

                                                                       
Query: 64  gaaaaggctgctgtggaactggtgaggcctgtaggtctggacaactctgagcttttccgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaaaaggctgctgtggaactggtgaggcctgtaggtctggacaactctgagcttttccgc 479

                                                                       
Query: 124 gaatgccttgatcttcacagataaacctggccttagggtctctggtaaacttcaaggagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaatgccttgatcttcacagataaacctggccttagggtctctggtaaacttcaaggagt 419

                                                                       
Query: 184 cttacaccttaggatagacagcagatctgaggggcatccgttttctgtgtgacctgttag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cttacaccttaggatagacagcagatctgaggggcatccgttttctgtgtgacctgttag 359

                                                                       
Query: 244 gctctttttctctctttatagagaaaatggtttccattttctgcatccctcttctgcagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gctctttttctctctttatagagaaaatggtttccattttctgcatccctcttctgcagt 299

                                                                       
Query: 304 ggtttttgaacagaggttctttcagtccctggagcctcttctgtgggctgtttacagtct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggtttttgaacagaggttctttcagtccctggagcctcttctgtgggctgtttacagtct 239

                                              
Query: 364 tccaaggcacttgcctttgaagattgggctactgg 398
           ||||||| |||||||||||||||||||||||||||
Sbjct: 238 tccaaggtacttgcctttgaagattgggctactgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_h22.g1 MSMg01no370_h22.g1 CHROMAT_FILE:
MSMg01no370_h22.g1 PHD_FILE: MSMg01no370_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:34 2005
         (355 letters)



>mm_chr4_133159768_133160522
          Length = 755

 Score =  687 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcagccttgaagggccttccttggctctcagcctggcctgggcttccccaagtcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcagccttgaagggccttccttggctctcagcctggcctgggcttccccaagtcctg 260

                                                                       
Query: 61  ggggcaacttggaaaccccaggacactaggagtctggacggtggggcttggcaaacttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggcaacttggaaaccccaggacactaggagtctggacggtggggcttggcaaacttga 320

                                                                       
Query: 121 aacttcttctaagcctacgaagggcgtgttctcctcgtgcctcttaagccaggaagctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttcttctaagcctacgaagggcgtgttctcctcgtgcctcttaagccaggaagctgg 380

                                                                       
Query: 181 tgggggtttacagctgcagctcagttctagaccctcttcctcctccaccgaagccaggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggggtttacagctgcagctcagttctagaccctcttcctcctccaccgaagccaggcc 440

                                                                       
Query: 241 ttgacacccctgccagctccggcctgcatatcctgactcagttcctgcttcagttgcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgacacccctgccagctccggcctgcatatcctgactcagttcctgcttcagttgcctc 500

                                                                  
Query: 301 cctttgcctccaggcttctacttcccaagtccagaagcccaggcaggcaggaggc 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttgcctccaggcttctacttcccaagtccagaagcccaggcaggcaggaggc 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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