Query= MSMg01no370_j18.b1 MSMg01no370_j18.b1 CHROMAT_FILE:
MSMg01no370_j18.b1 PHD_FILE: MSMg01no370_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:43 2005
(391 letters)
>mm_chr4_44541288_44542078
Length = 791
Score = 716 bits (370), Expect = 0.0
Identities = 382/386 (98%)
Strand = Plus / Plus
Query: 6 gaattcatttcatcctcgtcttcacagtgagccccaaatgtcagggtctttgccccgtgg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatttcatcctcgtcttcacagtgagccccaaatgtcagggtctttgccccgtgg 265
Query: 66 gggagtgaagcattacaaagcactatacaatgtcggttaggaaggctcaatctctgagaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gggagtgaagcattacaaagcactatacaatgtcggttaggaaggctcaatctctgagaa 325
Query: 126 ggtgtcttagcaaagggttggcggatttgctatctaacacaagttctcaggcaggagcta 185
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 ggtgtcttagcaaagggttggcggatttgctatctaacacaagttctcaggcgggagcta 385
Query: 186 gacaaatagtatgaaaatatctttttatcacaaagttcaaacaggacgacagaagtgaag 245
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 386 gacaaatagtatgaaaatatctttttatcacaaagttcaaacaggacgaaagaagtgaag 445
Query: 246 gcccgtgaggaatgcctgggcctcccggctcagagctgctaaagcccccggattctgttc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcccgtgaggaatgcctgggcctcccggctcagagctgctaaagcccccggattctgttc 505
Query: 306 tctggcattgtgcatctgtggtgtgagcgtgcgagcgagcaggtgtgtgagcctgaggac 365
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctggcattgtgcgtctgtggtgtgagcgtgcgagcgagcaggtgtgtgagcctgaggac 565
Query: 366 gcacacatgcccctgcatctcacgag 391
|||||| |||||||||||||||||||
Sbjct: 566 gcacacgtgcccctgcatctcacgag 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_j18.g1 MSMg01no370_j18.g1 CHROMAT_FILE:
MSMg01no370_j18.g1 PHD_FILE: MSMg01no370_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:43 2005
(360 letters)
>mm_chr4_44669184_44669943
Length = 760
Score = 673 bits (348), Expect = 0.0
Identities = 358/362 (98%), Gaps = 2/362 (0%)
Strand = Plus / Minus
Query: 1 tatcagagacagtggacagtgagattaactcaggcctgataggttcaatgagttaaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tatcagagacagtggacagtgagattaactcaggcctgataggttcaatgagttaaagca 656
Query: 61 tgatgttcatttcagcttcatttcaccagtctttgcttgtgaaattggtcaatcaataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgatgttcatttcagcttcatttcaccagtctttgcttgtgaaattggtcaatcaataga 596
Query: 121 ggttgaagatc--atatatatatatatatatatcagggactatcttatggagaatatcat 178
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 595 ggttgaagatcatatatatatatatatatatatcggggactatcttatggagaatatcat 536
Query: 179 cttggctgttggctcctggctggggctgcctgaggcaggtaatggagacagaacaaggat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cttggctgttggctcctggctggggctgcctgaggcaggtaatggagacagaacaaggat 476
Query: 239 tccatcagccccatcaaaatggtctggtatattctccaaatgaaaagtatttttggatct 298
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tccatcagtcccatcaaaatggtctggtatattctccaaatgaaaagtatttttggatct 416
Query: 299 ctgatgatttatcttttttttcctctcactttgatctatgactaaacccatacccatctt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctgatgatttatcttttttttcctctcactttgatctatgactaaacccatacccatctt 356
Query: 359 gg 360
||
Sbjct: 355 gg 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
