BAC Information

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BAC

Clone NameMSMg01-370N22
Chromosome4 (Build37)
Map Location 82,021,011 - 82,193,086
singlet/doubletdoublet
Overlap geneNfib
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
Downstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370N22.T7 (MSMg01no370_n22.b1)MSMg01-370N22.TJ (MSMg01no370_n22.g1)
ACCAG477513AG477514
length792804
length of high quality
(start - end)		511 (35 - 545)440 (66 - 505)
definitionCHROMAT_FILE: MSMg01no370_n22.b1 PHD_FILE: MSMg01no370_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:03 2005CHROMAT_FILE: MSMg01no370_n22.g1 PHD_FILE: MSMg01no370_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,021,011 - 82,021,518)(82,192,724 - 82,193,086)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGCTC
TCTGTGGGAACCAAGACATTCAACAATGAAAGAAAAATACATTCCAGCAA
CAGCTCTTAAAATTTAACAAACTACAATTTCTTGATGTCAAGCCTTCTGG
GAAGTTTTCTTCCTGAACTAGGGACAGTGTAAGCTGAGTGCCTTCATCAG
TATATTAAAACACTTTCCTGAAGATTTCACCTCAGTGATGCTGGTCTCTT
CTTAATCACTATTAATTTCTTAGCTCCAGCTAACCAGCATCAATAGTGCC
TACATCAGAATATTATATTTTTATTCAGAATCCATGTTGCATGGCTACTT
AATTTTAGACACTACAAAGACCCTTAACACGGTTAAAATTAAAACAAACA
ACAACAACAAAAAATAACTTGAATAACTAAGACTAGCCCCTGAACCAACC
TGTCCTCTCTCTTACTACATGGTAGAAAGACAATATTTTCTCGTTTACTT
AAGTTATACTGGGGCTAAGTGACAAGTCTCAACCTGAATTATTCATTGAC
GAGTTGGCATGTAAAATATTATGGAGTGAGGAAGAGACAGGTGATTCTGG
GCAATGTGAAATGATGCAGTAANGGGAGCCTGCTTTCCAGGTGAACTCAT
CCCACTTCCTAAAGACCTCCTAAATCACCCCTCCTCTAAACCCATCTGGG
TTTGGGGCCCCCCCCCCCAACCCCACACAAAGTTCCTCCCTAATTTTTAT
TAAGCCCCCCCCCATAGTTTCCCCCAAAAATATCCCCCTTGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACCCATCCAAAGGTAAAATTCAGTGGTTTTTAAAT
GCAGCAATCAAGTGGAGCAAGCATCACTTCCATTAATTCAAGAACTTTTT
TTTTTATCACCACTCAAGTAAATTCTGTTCCACTCTGCTGTCTCCCAAAG
TCTGTTCATCACTCCAAGTCCAGGTAACCAGTATGGTGCTTTTTCTCTAT
AATGGTTTACCTATATACTCCAGAGATACGGAGTATCTGCCTTTCTTCTG
GTTGGCTTCATTACTCAGGAAGATGTTTAAAGACTCATCCACCATATCTA
TCACTTCAGACCTCTCTACTGATGACCAGAATCCAGTTTTATAGACAAGC
CATTTTACACTCTCCATTCCTCAACCAGCATGTAAACTCTCCCTTTCATG
CCTATATTGAAAAGGCTGCTGTGAATACCTCTGCTCCTTCTGCTTCTCTT
TGTCAGTGCTGGGGCTTGAACCTTGTGTTATGCACATTGCTGTGCAAGCG
CCGCATGTCTGAGCTATATCCCCAGCCCTGATCAAATCATGAACACTTCT
ATACATGTTTTATGTGGGAAGAATCTCCCTTTTTCTTAATGGAACGTTTT
TTTAAGAAAAAATTGAACACATTTTTCTTTTTTTCTTTTTACAAGGGACG
AATTTTTTAACTTGAACCAAAAGGCCCGTAATCAATTTTAGGTCCCTAAC
ATGAGAAAATCATTTCTCCCACTTTCTTGTTTCTAAAAATAAGAAAAAAG
GCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_n22.b1 MSMg01no370_n22.b1 CHROMAT_FILE:
MSMg01no370_n22.b1 PHD_FILE: MSMg01no370_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:03 2005
         (511 letters)



>mm_chr4_82020808_82021718
          Length = 911

 Score =  975 bits (504), Expect = 0.0
 Identities = 507/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggctctctgtgggaaccaagacattcaacaatgaaagaaaaatacattccag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggctctctgtgggaaccaagacattcaacaatgaaagaaaaatacattccag 263

                                                                       
Query: 64  caacagctcttaaaatttaacaaactacaatttcttgatgtcaagccttctgggaagttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caacagctcttaaaatttaacaaactacaatttcttgatgtcaagccttctgggaagttt 323

                                                                       
Query: 124 tcttcctgaactagggacagtgtaagctgagtgccttcatcagtatattaaaacactttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcttcctgaactagggacagtgtaagctgagtgccttcatcagtatattaaaacactttc 383

                                                                       
Query: 184 ctgaagatttcacctcagtgatgctggtctcttcttaatcactattaatttcttagctcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgaagatttcacctcagtgatgctggtctcttcttaatcactattaatttcttagctcc 443

                                                                       
Query: 244 agctaaccagcatcaatagtgcctacatcagaatattatatttttattcagaatccatgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctaaccagcatcaatagtgcctacatcagaatattatatttttattcagaatccatgt 503

                                                                       
Query: 304 tgcatggctacttaattttagacactacaaagacccttaacacggttaaaattaaaacaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcatggctacttaattttagacactacaaagacccttaacacggttaaaattaaaacaa 563

                                                                       
Query: 364 acaacaacaacaaaaaataacttgaataactaagactagcccctgaaccaacctgtcctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaacaacaacaaaaaataacttgaataactaagactagcccctgaaccaacctgtcctc 623

                                                                       
Query: 424 tctcttactacatggtagaaagacaatattttctcgtttacttaagttatactggggcta 483
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 tctcttactacatggtagaaagacaatattttctcatttacttaagttatactggggcta 683

                                       
Query: 484 agtgacaagtctcaacctgaattattca 511
           ||||||||||||||||||||||||||||
Sbjct: 684 agtgacaagtctcaacctgaattattca 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_n22.g1 MSMg01no370_n22.g1 CHROMAT_FILE:
MSMg01no370_n22.g1 PHD_FILE: MSMg01no370_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:03 2005
         (440 letters)



>mm_chr4_82192247_82193086
          Length = 840

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%)
 Strand = Plus / Minus

                                                                       
Query: 78  aacttttttttttatcaccactcaagtaaattctgttccactctgctgtctcccaaagtc 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aacttttttttttatcaccactcaagtaaattctgttccactctgctgtctcccaaagtc 781

                                                                       
Query: 138 tgttcatcactccaagtccaggtaaccagtatggtgctttttctctataatggtttacct 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tgttcatcactccaagtccaggtaaccagtatggtgctttttctctataatggtttacct 721

                                                                       
Query: 198 atatactccagagatacggagtatctgcctttcttctggttggcttcattactcaggaag 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atatactccagagatacggagtatctgcctttcttctggttggcttcattactcaggaag 661

                                                                       
Query: 258 atgtttaaagactcatccaccatatctatcacttcagacctctctactgatgaccagaat 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 atgtttaaagactcatccaccatatctatcacttcagacctctctactgatgaccagaat 601

                                                                       
Query: 318 ccagttttatagacaagccattttacactctccattcctcaaccagcatgtaaactctcc 377
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 600 ccagttttatagacaagccattttacactctccattcctcaaccggcatgtaaactctcc 541

                                                                       
Query: 378 ctttcatgcctatattgaaaaggctgctgtgaatacctctgctccttctgcttctctttg 437
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 540 ctttcatgcctatattgaaaaggctgctgtgaatacctccgctccttctgcttctctttg 481

              
Query: 438 tca 440
           |||
Sbjct: 480 tca 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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