Query= MSMg01no370_p20.b1 MSMg01no370_p20.b1 CHROMAT_FILE:
MSMg01no370_p20.b1 PHD_FILE: MSMg01no370_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:13 2005
(447 letters)
>mm_chr4_36596784_36597630
Length = 847
Score = 818 bits (423), Expect = 0.0
Identities = 441/453 (97%), Gaps = 10/453 (2%)
Strand = Plus / Plus
Query: 5 gaattcgtaaaaaatattccagatttagtaatgcacagatttaatcccagaactcttgtt 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattcgtaaaaaatatttcagatttagtaatgcacagatttaatcccagaactcttgtt 254
Query: 65 gacatagaaagtagagacaagactattgaaaagcagctcacaagacagctgttctgggat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gacatagaaagtagagacaagactattgaaaagcagctcacaagacagctgttctgggat 314
Query: 125 atggggcatagcaaaaacaacatgaatgaccctgctttaacaagttagaaagagaaaact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atggggcatagcaaaaacaacatgaatgaccctgctttaacaagttagaaagagaaaact 374
Query: 185 gatccttcaaagttgttctatgacttaagcaaacaatcacacacacacacacacacacac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gatccttcaaagttgttctatgacttaagcaaacaatcacacacacacacacacacacac 434
Query: 245 acacacacacacacaca----------tgcacgacatttaaatatatacatattgttttt 294
||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 435 acacacacacacacacacacacacacatgcacgacatttaaatatatacatattgttttt 494
Query: 295 gaggcagggcttctctacaatgtagcatcttctatgctggaatgcaacaatgactgagta 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaggcagggcttctctacaatgtagcatcttctatgctggaatgcaacaatgactgagta 554
Query: 355 aaagaataaaaagttttaaattttcaaaacacaaaagtgactgaagagagttatcctttc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaagaataaaaagttttaaattttcaaaacacaaaagtgactgaagagagttatcctttc 614
Query: 415 agctggatctcagatgtggtggattaatacacc 447
||||||||||||||||||||||||||||||||
Sbjct: 615 ggctggatctcagatgtggtggattaatacacc 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_p20.g1 MSMg01no370_p20.g1 CHROMAT_FILE:
MSMg01no370_p20.g1 PHD_FILE: MSMg01no370_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:13 2005
(420 letters)
>mm_chr4_36771387_36772206
Length = 820
Score = 779 bits (403), Expect = 0.0
Identities = 418/423 (98%), Gaps = 4/423 (0%)
Strand = Plus / Minus
Query: 1 tcatagaatccagggccaccaggtcaagagtggctccactcacaatggactggactgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tcatagaatccagggccaccaggtcaagagtggctccactcacaatggactggactgttc 728
Query: 61 aacattaatcactaattaagaaaatgccctacaggcttgtctacagttcaaacttacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aacattaatcactaattaagaaaatgccctacaggcttgtctacagttcaaacttacaga 668
Query: 121 ggca-tttttttttcaattggggatttcttctctgataactttagcttgagtcaaactgt 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggcattttttttttcaattggggatttcttctctgataactttagcttgagtcaaactgt 608
Query: 180 cataaagctagccagcactatcttattagtgacaccagaaaaaaaaaaaag-aaaaaaaa 238
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 607 cataaagctagccagcactatcttattagtgacaccag-aaaaaaaaaaagaaaaaaaaa 549
Query: 239 tataaacaatttacactgtcacaaactgtttattttccctctgatctcagtgtgtccatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tataaacaatttacactgtcacaaactgtttattttccctctgatctcagtgtgtccatt 489
Query: 299 agagccttccaatataaaaggagtcttttttaaatgaatattatggccactgaatctcat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agagccttccaatataaaaggagtcttttttaaatgaatattatggccactgaatctcat 429
Query: 359 gtgccaattattttatctagaagatcaga-ttttattggtattattattattattattat 417
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 428 gtgccaattattttatctagaagatcagatttttattgttattattattattattattat 369
Query: 418 tat 420
|||
Sbjct: 368 tat 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
