Query= MSMg01no371_k12.b1 MSMg01no371_k12.b1 CHROMAT_FILE:
MSMg01no371_k12.b1 PHD_FILE: MSMg01no371_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:11 2005
(507 letters)
>mm_chr4_88566465_88567371
Length = 907
Score = 973 bits (503), Expect = 0.0
Identities = 506/507 (99%)
Strand = Plus / Plus
Query: 1 ttttgatgggaaggggtcacagaaggcttcacaggagagatgcctgtgctgagcaagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgatgggaaggggtcacagaaggcttcacaggagagatgcctgtgctgagcaagcaa 260
Query: 61 agactgaatgcagaagagtgattccagaggctgggagggagaggtggccacacacaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactgaatgcagaagagtgattccagaggctgggagggagaggtggccacacacaagga 320
Query: 121 cactgactatttatgaatgaaaaaatccatggaaccatattaatatgtgtaattaatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgactatttatgaatgaaaaaatccatggaaccatattaatatgtgtaattaatgtt 380
Query: 181 aaccaagacatttttaaaagatatgagggcaggaggatcagaagttcaaggtcggtctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccaagacatttttaaaagatatgagggcaggaggatcagaagttcaaggtcggtctta 440
Query: 241 ctgtacagtgagtttaacgccagcctgagatacaggaggccctttatcaacaccaaccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtacagtgagtttaacgccagcctgagatacaggaggccctttatcaacaccaaccaa 500
Query: 301 ccagccaagtcctagaaaagacaagatggtacttttctagggaagaaaagaatcaccaca 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ccagccaagtcctagaaaagacaagatggtacttttcaagggaagaaaagaatcaccaca 560
Query: 361 caccaactgctcgggcataagtcaggcagaaacaaaaaagaataggctctgctatttgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccaactgctcgggcataagtcaggcagaaacaaaaaagaataggctctgctatttgta 620
Query: 421 ttctgaaaatgtcacctaagaagatcttgactttgacagcagggaacatcatttatggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgaaaatgtcacctaagaagatcttgactttgacagcagggaacatcatttatggaa 680
Query: 481 aatgcaccatgtgacaaggcatgaact 507
|||||||||||||||||||||||||||
Sbjct: 681 aatgcaccatgtgacaaggcatgaact 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_k12.g1 MSMg01no371_k12.g1 CHROMAT_FILE:
MSMg01no371_k12.g1 PHD_FILE: MSMg01no371_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:11 2005
(590 letters)
>mm_chr4_88726657_88727646
Length = 990
Score = 1060 bits (548), Expect = 0.0
Identities = 566/572 (98%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 5 gaattccatctgtttgacgctgacctggcttgtgagtatatatattaaatactcaaagaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattccatctgtttgaagctgacctggcttgtgagtatatatattaaatactcaaagaa 512
Query: 65 taacttccaagatttatgggttggaaaactctctttttttgtggatcgtcttaacatcat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 511 taacttccaagatttatgggttggaaaactctctttttttgtggatcgtcttaacatcct 452
Query: 125 acggaacacaattttgagaatatagctagcaaccaagtgtaacacacacagggatctgaa 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 451 acggaacacaattttgagaatatagctaacaaccaagtgtaacacacacagggatctgaa 392
Query: 185 ttgttacttctgtatcccctggaggtgggtggcttgttatggctaattagtgtcacatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttgttacttctgtatcccctggaggtgggtggcttgttatggctaattagtgtcacatat 332
Query: 245 ctctccatatgttagtgatgagaatcatgagttctctttaataacaacaataacaagagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctctccatatgttagtgatgagaatcatgagttctctttaataacaacaataacaagagt 272
Query: 305 aatgatataatttaacccttacttatttactaggaagtgttatgagagattatgtggatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatgatataatttaacccttacttatttactaggaagtgttatgagagattatgtggatt 212
Query: 365 aattcactaaatttaaaatttttatttatttgtttttattttatgtgcattggtgtttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aattcactaaatttaaaatttttatttatttgtttttattttatgtgcattggtgtttta 152
Query: 425 ccagcatgtatgtatgtatatcggatcctctggaactggagttgtagacagttgtaagca 484
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ccagcatgtatgtatgtatattggatcctctggaactggagttgtagacagttgtaagca 92
Query: 485 tccatgtgggtgctggaaattgaacctaggtcctctggaagaacagccagtgctaataaa 544
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tccatgt-ggtgctggaaattgaacctaggtcctctggaagaacagccagtgctaataaa 33
Query: 545 tactgaaccatctctccaggcctgaaataatt 576
||||||||||| ||||||||||||||||||||
Sbjct: 32 tactgaaccatttctccaggcctgaaataatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
