BAC Information

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BAC

Clone NameMSMg01-372C23
Chromosome4 (Build37)
Map Location 108,017,008 - 108,017,406
singlet/doubletsinglet
Overlap genenone
Upstream geneYipf1, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik
Downstream geneLOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372C23.T7 (MSMg01no372_c23.b1)MSMg01-372C23.TJ (MSMg01no372_c23.g1)
ACCAG478508AG478509
length856802
length of high quality
(start - end)		---398 (66 - 463)
definitionCHROMAT_FILE: MSMg01no372_c23.b1 PHD_FILE: MSMg01no372_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:52 2005CHROMAT_FILE: MSMg01no372_c23.g1 PHD_FILE: MSMg01no372_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCACTCACAGAGTTCGAGACGTCGCCAGCTAACCTCGTTTACCGCAGT
GCCATANTAACGCGAAGAAGCAGCAAGCTGCTCATAGCCTCCTGTTGTCC
ACANGCCTTGAGAGCGCTCTCCTCATCCGNAATGGNTTTCCACCCCTGAN
CCTANCTGATCNGTNCCAAANGAATGGAATTGAAAAAAATGAGTTTAAGG
AGCTCGAACCTTTTAAATTACCCAATAAAAATTTGCCAAAGTGGAACCCT
TAAGAGTTGTTTTCAAGGGGCCCCTTTTTTGGGCCATTTTCCCCCTCCCT
TTTTTCTTCTTGTTTTAAATACCCCCCCCCCCCTCTTTTGTGTTTTTTNT
NNTTTTCCCCCTTTTTNGGGGGGGAAAAATAAAAAANCCTTGCTTTTTTT
TTTTTTTGTNCTTTCTTTTTCTGGGGGCCCCCTTTTCNTTTATAAAAAAA
ATNTTTTNNTNTTTNNNNTTCCCCTTTTCTCCCTTTCTTTTTTTTCCCCC
CTNCTTTTTNTTCTTTTTATTTTTTCTTNNTTTTTCTTTTTTTTTTCTTC
TTTGCTTCCTTTTCTCCTTNTTTCCTTTTTTTTTTTTCTTTCTTTCTTTT
TTTTCTTCTTTTTTCTTTTTTTTTTTTCTCTTTTTTTTNTTTTTTTNNCT
CTTTTTTTTTTTCTTTTTTTTTTNNNTTTTTTTCTTTTTTTTTTTCTTTT
TCCTTTTTTTTTTTTTTTNCTTTTTTTTCTCTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTCCTTNTTTTTTTCTTNTTTTTTTTTCT
TTTTTTCCNNTTTTTTTCTTTTTTTTTTCTTTTCCCCCCCATAGCGTGAA
GAGACA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAATCCTCTAAATCCCCGGAGCTCCGGGATTATAAG
CACACACCACATCTGGCTTGAAATGTAACATTCTGACAGCTAACCTTCTC
TATTGTTCCAGGTCCATCTCAGGATGTGACCTAATGAGGCAGGCACCTCA
GATCCCAGGCAGAAATTACTCCATAAATGAGAGTGAGTACACAAGGGCCA
AGTGAACTGTCCCTTCAGAATCTCAGAAGCCATCGTGTGACTGTGAAAAC
AGGATTCTTCTCTCTCTCTCTTTTTTCTTTGTTTGGTTTTTCAAGACAGG
GTTTTTCTGTGGAGTCCAGGAACTCCCTCTGTGGACCAGACTGGACTTTA
ATTCAGAGCTCTACCTGCCTCTGCTGTGCGGTTCAAAGCCATCACACTTG
ACTTTGTTTGTTGTTTGTTTGGCTTTGTTTTTCAAGACAGGGTTTTTCTG
TGGAACCCTGGTTGCCCTGCCCTTCCTTCTGTATAACAATTTTCTCCTTT
GGGTTTTTAAAAAAAAATTCTTGCTAAAAAATTGGCTCTTTTTTTTGTCA
CATAAGGCCCTGATTCATTAAAGAGGGTTTTGAAAACCTTAAAGGCTTTT
AATTATATCCCCCCTTGCCCTTTTCATTCTTTTGGTCCCCTCTTTTGTCC
ACTTTGCTCTTATTTCCCCCAAATTTTTCCCTCCTTTTGCCCCCCTTCCC
CCTTTTCCTCTCCTCCCCCCCCCTTCTCTTTTATATTACCCCCCCTCTCT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_c23.g1 MSMg01no372_c23.g1 CHROMAT_FILE:
MSMg01no372_c23.g1 PHD_FILE: MSMg01no372_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:52 2005
         (398 letters)



>mm_chr4_108016940_108017738
          Length = 799

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%), Gaps = 1/399 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcctctaaatccccggagctccgggattataagcacacaccacatctggcttgaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aatcctctaaatccccggagctccgggattataagcacacaccacatctggcttgaaatg 408

                                                                       
Query: 61  taacattctgacagctaaccttctctattgtt-ccaggtccatctcaggatgtgacctaa 119
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 407 taacattctgacagctaaccttctctattgttcccaggtccatctcaggatgtgacctaa 348

                                                                       
Query: 120 tgaggcaggcacctcagatcccaggcagaaattactccataaatgagagtgagtacacaa 179
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgaggcaggcacctcaggtcccaggcagaaattactccataaatgagagtgagtacacaa 288

                                                                       
Query: 180 gggccaagtgaactgtcccttcagaatctcagaagccatcgtgtgactgtgaaaacagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gggccaagtgaactgtcccttcagaatctcagaagccatcgtgtgactgtgaaaacagga 228

                                                                       
Query: 240 ttcttctctctctctcttttttctttgtttggtttttcaagacagggtttttctgtggag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttcttctctctctctcttttttctttgtttggtttttcaagacagggtttttctgtggag 168

                                                                       
Query: 300 tccaggaactccctctgtggaccagactggactttaattcagagctctacctgcctctgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tccaggaactccctctgtggaccagactggactttaattcagagctctacctgcctctgc 108

                                                  
Query: 360 tgtgcggttcaaagccatcacacttgactttgtttgttg 398
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgtgcggttcaaagccatcacacttgactttgtttgttg 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 799
Length adjustment: 9
Effective length of query: 389
Effective length of database: 790
Effective search space:   307310
Effective search space used:   307310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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