BAC Information

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BAC

Clone NameMSMg01-372E02
Chromosome4 (Build37)
Map Location 118,334,207 - 118,334,679
singlet/doubletsinglet
Overlap genenone
Upstream genePrnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290
Downstream geneOlfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372E02.T7 (MSMg01no372_e02.b1)MSMg01-372E02.TJ (MSMg01no372_e02.g1)
ACCAG478561AG478562
length798752
length of high quality
(start - end)
151 (42 - 192)473 (72 - 544)
definitionCHROMAT_FILE: MSMg01no372_e02.b1 PHD_FILE: MSMg01no372_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:57 2005CHROMAT_FILE: MSMg01no372_e02.g1 PHD_FILE: MSMg01no372_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATTCTTTTCGAACACACATGAGTGATAGAGTGATACATGGTCTGTGTT
GTGCCTTCTTTATGTTATGGTGTTTAGATTTCTTTCTTTAATGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTCCCT
CCCTCTCCCCTCCTCTCCTTCTTTACCTCCCCCTCCCCTCCACCTTTTTT
TCCTCTTTTCTCCCCCCCCACTTTTTATCTCTCTTTTTCTTTCTCCCCAC
CCCCCCCCCCTTTTTTTTTTTTCANACCTTCCAACCCCAAACCCCTCAAC
CCCTTTTTTTCTCCCCTCCACCCCCCATCCACATTACTCTTTCCTCATCT
TATTTAATAGTACACCCTTTCTCTCACCCCTACCCCCATCACACCCCATT
CCCCCCTTTCCCCCTCTCTCCCCCTATCCCCCCTCTCCTTCCTTTCCCCC
TCCTCCCCCCTCCTTCCTCCTCCCTTTTCCCCTCACCTCTCCTCATCCCC
TCATCCTATATACCCCTCTCTCCTTCGCTTATTACCTCCTCACTCTCCCT
CTCCCTCCTTCTACCCCACCCTCCTCCCTCTCTTTTTCACTTCTTTCCCC
CCCCTTTTTTCCTCCCTTTTTTCTTCTCACCTATCTCCATCTCCTCCCTT
CTTTTTCCCTTCCTGCATTCCCCCCCTACCTCATCTCCCCCCTTCCCTCA
CAATACCTCCACCCAATCCTCTAATTATCCCCCTCCTTCATTACTTTT
ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAGAATGAGAGCTGGAGCACGGATGTGG
ATGGGGGTGCCGTTCGCTGAGCTGAGCAGCACAGGACTAGAGTCTGGATG
AGATGCGTTCAGACTAGTTTGGGGGCTTAGGCAGCTTGTGGAATCGCCAG
CCTCCAGTGGATGTCTGTGACTAGAACAGAAGGCACGGCTTAGAGGCAGA
AATCAGTGTTACTGGCACTTTCATAAGAGCTGAAGCAATTGGAGGTGATA
GGGCCGCAGGAAGTGTATGAAGGAAGAGAGCTGAATGCAGAACACCAGAA
AACCACAGTTGTAAAAGCTAGCCTAAGGGAGAAAACCCAGAGATGAAGGT
GGGATTGGGAGACAATAAAGAATGCCATGTGAGACAGAAACCCAAGGTGA
GACAAAGCCCTCAAGAAGTGAGAGGTCTTTGTGACCCAGTGTGAGAAGAT
AGCAGGTGAGACAAGAGGCAGAAACTCTACCACTTTAGCACCTAGAAAAT
TCTGGAAGAGTAGATCCCAAATTATGTTAAGAGAAGCCAGTTCAGGCTGG
CTGTCCAAGACTCTGGACCAAGATGGAAGAGAGTCTTATGTAAGGCATAT
CCTGGTTGAAGGAAATGTAACTTTTTTTGTCGTGAGGATTATGGCTTCAT
CCTGGGGTGGTAACTAATGAGGGAACCCTTTGACAATTGCCATAAAGGTG
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_e02.g1 MSMg01no372_e02.g1 CHROMAT_FILE:
MSMg01no372_e02.g1 PHD_FILE: MSMg01no372_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:57 2005
         (473 letters)



>mm_chr4_118334007_118334879
          Length = 873

 Score =  845 bits (437), Expect = 0.0
 Identities = 464/473 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaatgagagctggagcacggatgtggatgggggtgccgttcgctgagctgagcagca 60
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 673 ttagaatgagagctggggcacggatgtggatgggggtgccattcgctgagctgagcagca 614

                                                                       
Query: 61  caggactagagtctggatgagatgcgttcagactagtttgggggcttaggcagcttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 caggactagagtctggatgagatgcgttcagactagtttgggggcttaggcagcttgtgg 554

                                                                       
Query: 121 aatcgccagcctccagtggatgtctgtgactagaacagaaggcacggcttagaggcagaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 553 aatcgccagcctccagtggatgtctgtgactagaacagaagacacagcttagaggcagaa 494

                                                                       
Query: 181 atcagtgttactggcactttcataagagctgaagcaattggaggtgatagggccgcagga 240
           ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 493 atcggtgttactagcactttcataagagctgaagcaattgaaggtgatagggccacagga 434

                                                                       
Query: 241 agtgtatgaaggaagagagctgaatgcagaacaccagaaaaccacagttgtaaaagctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtgtatgaaggaagagagctgaatgcagaacaccagaaaaccacagttgtaaaagctag 374

                                                                       
Query: 301 cctaagggagaaaacccagagatgaaggtgggattgggagacaataaagaatgccatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cctaagggagaaaacccagagatgaaggtgggattgggagacaataaagaatgccatgtg 314

                                                                       
Query: 361 agacagaaacccaaggtgagacaaagccctcaagaagtgagaggtctttgtgacccagtg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 313 agacagaaacccaaggtgagacaaagccctcaagaagtgagaggtctttgtggcccagtg 254

                                                                
Query: 421 tgagaagatagcaggtgagacaagaggcagaaactctaccactttagcaccta 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgagaagatagcaggtgagacaagaggcagaaactctaccactttagcaccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)