BAC Information

Click to search

BAC

Clone NameMSMg01-372H24
Chromosome4 (Build37)
Map Location 90,596,871 - 90,597,274
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1
Downstream geneLOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372H24.T7 (MSMg01no372_h24.b1)MSMg01-372H24.TJ (MSMg01no372_h24.g1)
ACCAG478749AG478750
length786834
length of high quality
(start - end)
408 (38 - 445)227 (68 - 294)
definitionCHROMAT_FILE: MSMg01no372_h24.b1 PHD_FILE: MSMg01no372_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:15 2005CHROMAT_FILE: MSMg01no372_h24.g1 PHD_FILE: MSMg01no372_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
AGCAAGTGAGGCAAGATCTGTGTTAATCTGATAATCCTAAAGAAGAATCT
TGACAAAATGTCAAATACTGTGCTTATGAGCCTCTGAAAGTCCCTAAATC
CGAACAACTATTTCACTAGAGGGATGAAAGCGAGGGAAGGAAGGCCATGC
AATCCTTGATGCACCCACTAATGTGGAGGAAGGAAATACTATGGAATGTT
AACTACTCATCTGGCCCCTCAGGAGTTGACTAATACCCTCGGGTAAGACT
CTTAAAAGATATCCAGAGTTCCCATTTACAATGTAGATCCATTGGTCTTT
TACTGTTATGTCTATTATTGGCATTCTGCTGAATACTGAAGCTTGGTCTG
CCTTGAGTAGTGGAAGTAGGACTAGTTATGTAAATAGTATAGTGGAAATT
AAAAAATTAAGTTCCTTCTAGGGTGTGGGCAATGATCTGGCCCCCCTGAG
TACACTGAGAAACCATATAATGGGGGGGGGGTATCCTAATAAGGTTAACC
TGGATGGAAACATTCCTGGAAAGGCCGGCCTGAAATTACCCCCTGCCATA
AAACGGAATCCCCATTGGTTCTTTGGATAATTGGGGGAACCTTTTAATTT
CCCCCCTAACTCGTGAAAAATTTTGGTTCTTTTTCTAAANTTCCTCCATC
ACCCCCCCCGAAAAATCAACTCCCTTTCCTCTCCGGGAAATTTCAATAAA
TCCCCCTCTACTCTCCTTTTTTTTTTTTTAAAATAA
GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTCACATTAGGAAAGGAGATAACTGACTCCTG
AAAATTGCCTTCCAATTTTCACATGTGGCATGTCCGAACACACACACACA
CACACACACACACACACACACACACACACACACACGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAC
AGAGAGACAGAGACAGAGGGGGGGAGGGAGAAAGGGGGAGGTGANANTTT
TNTNNNNNCNNNNNNTTTTTTTTTTNNNNNTTNTNNTTNTNTTTTTTTTT
TTTTTTTCTTTNNTTTTNTTTTTTTTTTTTTGTTTTTTTTTTTTNTTTTT
NNNTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNTTT
TTTTTCCTTTTTTTTTTCTCTNNTTTTTTTTTTTTTTTTTCCCTCTCTTT
TTCCTCTTTTTTTTTTCTCCCCCCTTTTTCTTCCCCTTTTCCCCCCCTTT
TTTTTCTTTTTTTTTTTCCCCCTTCTCCTTTTTTTTCTCTCCCTTCTCTT
TCCTTTCTTCTTTCCTCCCCTCTCCCTTTTTTTTTTCTCCCCCCCTTCTT
CTCTTCCTTTTTTCTTCCCTTTTCTTTTCCCTTTTTCCCTTTCTCTCTTC
TTCCTTCCCTCTTTTTTTTTCTTCCTTCCCTCCTCCTTCCTTCTTCCCCT
TTTTTTTCTCCCCTTTTTTTTTTTTTCTTTTTTTCTCCCTCCCCCTTTTT
CTCCTTCTTTTTTTTTTTCCTTCTTCCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_h24.b1 MSMg01no372_h24.b1 CHROMAT_FILE:
MSMg01no372_h24.b1 PHD_FILE: MSMg01no372_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:15 2005
         (408 letters)



>mm_chr4_90596668_90597475
          Length = 808

 Score =  729 bits (377), Expect = 0.0
 Identities = 398/405 (98%), Gaps = 2/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaaagcaagtgaggcaagatctgtgttaatctgataatcctaaagaagaatct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaaagcaagtgaggcaagatctgtgttaatctgataatcctaaagaagaatct 263

                                                                       
Query: 64  tgacaaaatgtcaaatactgtgcttatgagcctctgaaagtccctaaatccgaacaacta 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 tgacaaaatgtcaaatactgtgcttatgagcctctgaaagtccctaaatctgaacaacta 323

                                                                       
Query: 124 tttcactagagggatgaaagcgagggaaggaaggccatgcaatccttgatgcacccacta 183
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcactaaagggatgaaagcgagggaaggaaggccatgcaatccttgatgcacccacta 383

                                                                       
Query: 184 atgtggaggaaggaaatacta-tggaatgttaactactcatctggcccctcaggagttga 242
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtggaggaaggaaatactaatg-aatgttaactactcatctggcccctcaggagttga 442

                                                                       
Query: 243 ctaataccctcgggtaagactcttaaaagatatccagagttcccatttacaatgtagatc 302
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctaataccctcgagtaagactcttaaaagatatccagagttcccatttacaatgtagatc 502

                                                                       
Query: 303 cattggtcttttactgttatgtctattattggcattctgctgaatactgaagcttggtct 362
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cattggtcctttactgttatgtctattattggcattctgctgaatactgaagcttggtct 562

                                                        
Query: 363 gccttgagtagtggaagtaggactagttatgtaaatagtatagtg 407
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gccttgagtagtggaagtaggactagttatgtaaatagtatagtg 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)