Query= MSMg01no372_j05.b1 MSMg01no372_j05.b1 CHROMAT_FILE:
MSMg01no372_j05.b1 PHD_FILE: MSMg01no372_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:21 2005
(424 letters)
>mm_chr4_127685992_127686816
Length = 825
Score = 791 bits (409), Expect = 0.0
Identities = 421/425 (99%), Gaps = 1/425 (0%)
Strand = Plus / Plus
Query: 1 ggcccccatgtgggaggggg-accccatgtttactccgggagccagcagtcagctgcttc 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcccccatgtgggaggggggaccccatgtttactccgggagccagcagtcagctgcttc 260
Query: 60 ctccctgtccatcatctcaggcctctgcatgtgctgatttcctccctgagggcactgctc 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctccctgtccatcatctcaggcctctgcatgtgctgatttcttccctgagggcactgctc 320
Query: 120 accccctttcttaactttattaaccatgactgagatttcctatctccctggactactttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accccctttcttaactttattaaccatgactgagatttcctatctccctggactactttg 380
Query: 180 cctaggttgttcacacaggcttgtgtcccttgtcttcagagggcttactgcagttaatta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaggttgttcacacaggcttgtgtcccttgtcttcagagggcttactgcagttaatta 440
Query: 240 tatccccaaatctctaatctcttactgtggtcttcctttgtgggaatgcaaacttcaaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatccccaaatctctaatctcttactgtggtcttcctttgtgggaatgcaaacttcaaga 500
Query: 300 gagtgagttgcagctggctttgtgtctcctctagtttcgggccacagatagtccccagga 359
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 501 gagtgagttgcagctggctttgtgtctcctctaggttcgggccacagatagttcccagga 560
Query: 360 aaaatatgtccttggctagtatcaataatgactcggggctggagggacaggttagcttgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatatgtccttggctagtatcaataatgactcggggctggagggacaggttagcttgt 620
Query: 420 aaagt 424
|||||
Sbjct: 621 aaagt 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 825
Length adjustment: 9
Effective length of query: 415
Effective length of database: 816
Effective search space: 338640
Effective search space used: 338640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_j05.g1 MSMg01no372_j05.g1 CHROMAT_FILE:
MSMg01no372_j05.g1 PHD_FILE: MSMg01no372_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:21 2005
(234 letters)
>mm_chr4_127847657_127848290
Length = 634
Score = 414 bits (214), Expect = e-120
Identities = 229/234 (97%)
Strand = Plus / Minus
Query: 1 cccaggaagctagcctgagggccgattacctaccatcaaccatgagcaaggaccaatgag 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cccaggaagctagcctgagtgccgattacctaccatcaaccatgagcaaggaccaatgag 375
Query: 61 ggaacctggaggacaggtcctgcctagggcagctcatggtctggtaatgggagctgcaca 120
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 374 ggaacctggaggacagttcctgcctagggcagctcatggtctggtaatggaagctgcaga 315
Query: 121 caggaagtagcaagaagcactgcatccaatggatctataagcctatcccggagtgattga 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 314 caggaagtagcaagaagcactgcattcaatggatctataagcctatcccggagtgattga 255
Query: 181 taggacagtgtgaggtttctggacgtcacacacctactctgggccagcaaggag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taggacagtgtgaggtttctggacgtcacacacctactctgggccagcaaggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
