BAC Information

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BAC

Clone NameMSMg01-372P04
Chromosome4 (Build37)
Map Location 86,699,892 - 86,700,438
singlet/doubletsinglet
Overlap geneSlc24a2
Upstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l
Downstream geneMllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372P04.T7 (MSMg01no372_p04.b1)MSMg01-372P04.TJ (MSMg01no372_p04.g1)
ACCAG479093AG479094
length745756
length of high quality
(start - end)
583 (42 - 624)546 (74 - 619)
definitionCHROMAT_FILE: MSMg01no372_p04.b1 PHD_FILE: MSMg01no372_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:48 2005CHROMAT_FILE: MSMg01no372_p04.g1 PHD_FILE: MSMg01no372_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTTTTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGT
AGTAAAGTTTTAAGTCTGGGATTGGGGATTCCCCAGAAGTTCTTTTTTCC
TTGGATAAACCTTTTGTTATCCCAAGTTTTTTGTTATCTCTATAA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGCCGTCATCATTGCAAGTGCCACAA
AGATAAGAACCCCTAGGATGTGAAGCAGGGCAATGAGACAACTTGGTACC
AAGCTTATCCAAGCTTGTTAAGACAAATTCAATATGGCCAAGAGGTTTTC
AAAAGAGAGTTGTTGTTCACTAGCAAAAGACAGTCGTCATGATGGGGCCA
ATATTTAAAAACATCTCTCCATTAATTCTTTACACCTGCTCTCAGATTTA
AGGAAAATCAAACACTGACCCAAAGGAGGGAGCGGATGGGACATGTGTGC
CTTCTTTATCTGATTGTCAGGTGCCGATCTGAGCCCAGACATTTTCCCTG
TGTGTAATTGCCAACGAGCTGGTTCCTGGCTAACTTGTCTTACGTTGAGA
GTAAAGACTCTGTCTTACTTTAAATCTGTCTAAAACAGAAAGCCCACATC
CCCACACCACATGCTCAGCTCTCCTCACATTTACTAAATAAAAGTATTCA
AATGGACAGCTCCGCAGAGACACTGGCATTCAGAACGCTTTGGTGTGTTG
AATTTTTCTGGACTTGGTAAAACCGAGAAGGTCAACGTTGCTGCTCAAGT
TTTTCCACTGCAGCCATTACCACAGGGGTGAAGAGGCCTTCACCGGGCAG
CTCAAAGAAGGGGGCTAAAAATAATGACCTGCGGGGCCCTCCCCCCCTCT
TTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_p04.g1 MSMg01no372_p04.g1 CHROMAT_FILE:
MSMg01no372_p04.g1 PHD_FILE: MSMg01no372_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:48 2005
         (546 letters)



>mm_chr4_86699692_86700638
          Length = 947

 Score =  980 bits (507), Expect = 0.0
 Identities = 537/547 (98%), Gaps = 1/547 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccgtcatcattgcaagtgccacaaagataagaacccctaggatgtgaagcagggcaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagccgtcatcattgcaagtaccacaaagataagaacccctaggatgtgaagcagggcaa 260

                                                                       
Query: 61  tgagacaacttggtaccaagcttatccaagcttgttaagacaaattcaatatggccaaga 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgagacaacttggtaccaagcttatccaagcgtgttaagacaaattcaatatggccaaga 320

                                                                       
Query: 121 ggttttcaaaagagagttgttgttcactagcaaaagacagtcgtcatgatggggccaata 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ggttttcaaaagagagttgttgttcactagcaaaagacagtcatcatgatggggccaata 380

                                                                       
Query: 181 tttaaaaacatctctccattaattctttacacctgctctcagatttaaggaaaatcaaa- 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 tttaaaaacatctctccattaattctttacacctgctctcagatttaaggaaaatcaaag 440

                                                                       
Query: 240 cactgacccaaaggagggagcggatgggacatgtgtgccttctttatctgattgtcaggt 299
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cactgacccaaaggagggagcagatgggagatgtgtgccttctttatctgattgtcaggt 500

                                                                       
Query: 300 gccgatctgagcccagacattttccctgtgtgtaattgccaacgagctggttcctggcta 359
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccgatcggagcccagacattttccctgtgtgtaattgccaacgagctggttcctggcta 560

                                                                       
Query: 360 acttgtcttacgttgagagtaaagactctgtcttactttaaatctgtctaaaacagaaag 419
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 acttgtcttatgttgagagtaaagactctgtcttactttaaatctgtctaaaacagaaaa 620

                                                                       
Query: 420 cccacatccccacaccacatgctcagctctcctcacatttactaaataaaagtattcaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccacatccccacaccacatgctcagctctcctcacatttactaaataaaagtattcaaa 680

                                                                       
Query: 480 tggacagctccgcagagacactggcattcagaacgctttggtgtgttgaatttttctgga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tggacagctccgcagagacactggcattcagaacgctttggtgtgttgagtttttctgga 740

                  
Query: 540 cttggta 546
           |||||||
Sbjct: 741 cttggta 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space:   502232
Effective search space used:   502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)