CCTCCTATTCGGAGAGGATCCGCGGAATTCTCTGTGTGACTTCAAAACTA
TAGAAAATACTCTTATTTATTTGTGTTGGCATGAGTTGATTTATGGAGTG
GGACAAGGGAAAGAATCCTAGCACATCTCATATCTCTATCATACTTGTTC
TCAAAGCACACAATACAATCAACAAAAATCAAACAACTAGAGAAACACAA
ATAAAAAAAAACCAAACACACACACACACACCCATATATATTTTATATAT
GTATATATATGGGTGGAAATTATGGATAGATGATAAAGAGATAGATTATA
GCTAGGTACATAGGTTAGACAGATGGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATANANANNATANA
TATGGGTTTTGGTTTATATTTTAATATTAAATGTGTTATGTATTGATAAA
ATATGATTTTTTTTTTTGTTTATTATGAGTTGATTGTTGTAATTTTAAAG
GTGGTTATTTTATTATATAAATTTTTTTTATGTTTTGTTTTGTTATTATA
TTAAAGAGTTGGTATTAATTTATTTTATTTTTGTTAGGTTTTTTTTGATT
TTGTTATATTTTGTGGTTTGATGTATTAATATATTAATTATTTAGGTTTG
TTTTTTGTGTGTTTAGTATCTAGTTCATGTTGGATTGTTATATTATTAAT
TAATCCGTATATTTGCTGCTCTTTAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCA
TCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTC
TTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGG
GTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGA
ATTANATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTGGTTGGTAGACTATTAATAACTGCTTCCTATTCTT
TAGGTGATATGTCACTGTCTATATGTTCAATTTGATTCTGAATCCCCTTT
GGTCACCGGTATTTGTCCAGATATTTGTCCTTTTTTTTCATGTTTTCCAG
CTTCGCTGAATTTTCCCTTTTTTTACTCTTTGACTCTTCTGTTTTTTCTT
TATCT

Query= MSMg01no373_b17.b1 MSMg01no373_b17.b1 CHROMAT_FILE:
MSMg01no373_b17.b1 PHD_FILE: MSMg01no373_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:00 2005
         (378 letters)



>mm_chr4_27016803_27017583
          Length = 781

 Score =  621 bits (321), Expect = 0.0
 Identities = 355/369 (96%), Gaps = 9/369 (2%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattctctgtgtgacttcaaaactatagaaaatactcttatttatttgtgttggcatga 72
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattctctgtgggatttcaaaactatagaaaatactcttatttatttgtgttggcatga 403

                                                                       
Query: 73  gttgatttatggagtgggacaagggaaagaatcctagcacatctcatatctctatcatac 132
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 402 gttgatttatggagtgggacgagggaaagaatcctagcacatctcatatctttatcatac 343

                                                                       
Query: 133 ttgttctcaaagcacacaatacaatcaacaaaaatcaaacaactagagaaacacaaataa 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttgttctcaaagcacacaatacaatcaacaaaaatcaaacaactagagaaacacaaataa 283

                                                                       
Query: 193 aaaaaaaccaaacacacacacacacac----ccatatatattttatatatgtatatatat 248
           |||||| ||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 282 aaaaaa-ccaaacacacacacacacacacacccatatatattttatatatgtatatatat 224

                                                                       
Query: 249 gggtggaaattatggatagatgataaagagatagattatagctaggtacataggttagac 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gggtggaaattatggatagatgataaagagatagattatagctaggtacataggttagac 164

                                                                       
Query: 309 agatggatagatagatagatagatagatagatagatagatagatagatagatagatagat 368
           |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||
Sbjct: 163 agatggatagatagatagatagatagatagatagatggataga--gatagatagata-at 107

                    
Query: 369 agatagata 377
           |||| ||||
Sbjct: 106 agat-gata 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 781
Length adjustment: 9
Effective length of query: 369
Effective length of database: 772
Effective search space:   284868
Effective search space used:   284868
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)