BAC Information

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BAC

Clone NameMSMg01-373E09
Chromosome4 (Build37)
Map Location 126,809,619 - 126,810,080
singlet/doubletsinglet
Overlap genenone
Upstream geneStk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968
Downstream geneLOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296, LOC635169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373E09.T7 (MSMg01no373_e09.b1)MSMg01-373E09.TJ (MSMg01no373_e09.g1)
ACCAG479342AG479343
length511714
length of high quality
(start - end)		---462 (55 - 516)
definitionCHROMAT_FILE: MSMg01no373_e09.b1 PHD_FILE: MSMg01no373_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:12 2005CHROMAT_FILE: MSMg01no373_e09.g1 PHD_FILE: MSMg01no373_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATGCAGAAGCNAGCTGCGCCAGCCCCGTGACCACCCGGCTCAGGCAATC
CCTCCGCGAGACCCAAACCGACGACTTGTTTTGTTTTTAAAGGAATGACC
AACCGGGCTGAAAAATTCCCCCAAGGATCCCTGCNCCCCCCCCCCCCCCC
TTTTAAAAGGCCCCAAACAACCCCCCCCCCCAAAAAGGGGTCCCCCCAAT
CCCCCCCCCCTTTTTTTCCGCCTTTCCCCCCGCCNCCCCCCTTTCCNNCC
CCCNNNNCCCNCCCCCNNNCCACNCCNCCCCCCCCCNNCCCCCCCCCCCN
NCCCCCCCCCCCCNCCTCCCCCCCCNCNNCCCCCCCCCNCCTCCCNCCCC
CCNCCCCCNCCCCCCCCCCCNACCCCCNCCCCNTCCCCCCCCCCCCTCCC
CCCCCCCCNNCTTCNCCCCCCCCCACTCCCCCCCTCCCTCCCCCCCCCCC
NNNCCCCTCTCCCCCCCCCCCCCCCTTCCCTCTTTTCCCCCCCCTCTCCC
GGGGCCGTGGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCCAT
CGGAATTCAGATTTCAACACCAGAAGAGACTGAGTTTGGGAACTGAAGAT
ATATGCAAGTGTGAAACATAGCAAGAAGACACTGGCTTATGCACTTCTGC
TCCATAGGGAGAGGGTGAGATGCCACCCAGGTATCTTTCTACTGTTCATG
GAGTGCGTGTATGGATGTATGCATTTTTCTGTGCACAGCCTAGAAGGGAC
AGAGCTAAGTTATGACGTCTCTTCCCAGTGCCAGCCAAGACTCAGGGTTT
TACTTGTTCTCGAATCAAGTATCCCCATGAGATAGTGAAGCCTCCATTTT
ACAGTAGCAAAGACAGGCTCAGTGAGGCTGAGAAATTAGCCCAGTGCCGC
ATGACAAATGAACAATGTGTGGCCAAATTCCCAAAGCCCGTGCCCTTCTT
GCTACCGCTTCCTCCTCCCCCTCCTCCTCTTCCTTCTCCTCCTCTTCCTC
CTCCTCCTCTTCTTCCTCCTCCCCCTTCTCTTCCTTCTCTTCCTCTTCTC
CTCCTCCTCTTCTTCCTCCTCCTCCTCCTATACCTCCTCCTCCTCTTTCC
TTTATCCCTTCTCCCCACCTTCTTCTTCTCCTTCTTTTTTTTTTTGGTTT
TTTCTACGTGCTTCCTCTGAAACCTTGTCTGTCTTGCAATCCTTTCGTTA
CTCCGCTGGTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_e09.g1 MSMg01no373_e09.g1 CHROMAT_FILE:
MSMg01no373_e09.g1 PHD_FILE: MSMg01no373_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:12 2005
         (462 letters)



>mm_chr4_126809419_126810280
          Length = 862

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcagatttcaacaccagaagagactgagtttgggaactgaagatatatgcaagtgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcagatttcaacaccagaagagactgagtttgggaactgaagatatatgcaagtgtga 260

                                                                       
Query: 61  aacatagcaagaagacactggcttatgcacttctgctccatagggagagggtgagatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatagcaagaagacactggcttatgcacttctgctccatagggagagggtgagatgcc 320

                                                                       
Query: 121 acccaggtatctttctactgttcatggagtgcgtgtatggatgtatgcatttttctgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccaggtatctttctactgttcatggagtgcgtgtatggatgtatgcatttttctgtgc 380

                                                                       
Query: 181 acagcctagaagggacagagctaagttatgacgtctcttcccagtgccagccaagactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcctagaagggacagagctaagttatgacgtctcttcccagtgccagccaagactca 440

                                                                       
Query: 241 gggttttacttgttctcgaatcaagtatccccatgagatagtgaagcctccattttacag 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gggttttacttgttctcgaatcaagtatccccatgggatagtgaagcctccattttacag 500

                                                                       
Query: 301 tagcaaagacaggctcagtgaggctgagaaattagcccagtgccgcatgacaaatgaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcaaagacaggctcagtgaggctgagaaattagcccagtgccgcatgacaaatgaaca 560

                                                                       
Query: 361 atgtgtggccaaattcccaaagcccgtgcccttcttgctaccgcttcctcctccccctcc 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 atgtgtggccaaattcccaaagcccgtgctcttcttgctaccgcttcctcctccccctcc 620

                                                     
Query: 421 tcctcttccttctcctcctcttcctcctcctcctcttcttcc 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctcttccttctcctcctcttcctcctcctcctcttcttcc 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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