BAC Information

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BAC

Clone NameMSMg01-373H19
Chromosome4 (Build37)
Map Location 138,973,388 - 138,973,872
singlet/doubletsinglet
Overlap geneZubr1
Upstream geneLOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik
Downstream geneC79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373H19.T7 (MSMg01no373_h19.b1)MSMg01-373H19.TJ (MSMg01no373_h19.g1)
ACCAG479506AG479507
length7261,029
length of high quality
(start - end)		485 (43 - 527)---
definitionCHROMAT_FILE: MSMg01no373_h19.b1 PHD_FILE: MSMg01no373_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:27 2005CHROMAT_FILE: MSMg01no373_h19.g1 PHD_FILE: MSMg01no373_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTTGCAGAGGATCCGCGGAATTCAAGGCCAATCCTTTCTACAGA
GTGAGTTTTAGGACACCCAGGGCTATATACACAGAGACCTTGTCTATAGA
TAGATAAATAAAAAATTTTAAAAGCATGTGAGGGAGAATAATCAGAATGT
ATTAAAAACATGCATGAAACTGGCAGTGTACAAATTTAATTAATTAGAAC
TAGTGTTATAAATTAAGCATTAAACATATAAACACAGCAATTTCAGAACT
GGACTTGAACCACTACAGCACAAGACATCTAGTAAGGTAGCAAGTGACAG
GCCGAGTCAGCTCCGAAGTTTCTCCAGGGTAAATCTCAAGAAGCCACGCT
ACAGTGCTAGAATGGGGCGGTGTGCAATGCCCAAAGGGAAGGCTACAGTG
CTAGAATGGGGCGGTGTGCAATGCCCAAAGGGAAGGCTACAGTGCTAGAA
TGGGGCGGTGTGCAATGCCCAAAGGGCAGGCTACAGTGCTAGAATGAGGC
GGTGTGCAATGCCCAAAGGGAACGCTACAGTGCTAGAATGGGGCGGTGTG
CAATGCCCAAAGGGAAAGCAGCCACAGCTGTCCTGCGGACAAACACACAG
GCTCCCTACCTGTTCCCCCCAAGATGGACGTGGGCCGTAACTGCCGCACT
GGCCGGTTCTCCTGAATGACCTCCCGCTGGCCGAAAACCCTCCTTGGGAA
GTTTTCCTGCTGGTGACCCACCCCGG

TTTTACTCTTATGCTGTTTACCTACTCTCCCCNTGCGTTTTTTTTTTTTA
ACTACATAATTCAATTTGNCTCCTTCCCCCTCAANCATAGGAATGTTAAT
GTGGTGTGGGGTGGAGTGTGTGGGGCTGTCTTGGTGTGTTCCTTCCTTTT
TTGGGTACCTCTCTCGTTGCTCGCCTTCCGTGGGGAGTGGTGTGAGATGG
CGGGGGCGGATTCTGCCGTCGTGCCATGTTCTCTTTAATTCTTTCCTATC
CTTAGTGAGCCTCCTTTGTGTCATATTTTTTAATACCCCCCNCCCCGGCG
TGCCTCTTCNTTTTTGTTTTTNNNNCGGCGCCAAAAAAGTGAACATTAAA
GNTGGGGGGGGGNTTTGAAGGGCCCCCCTGGGGGNNGCGGGGGCCCCGGG
NCCCCTTGGGNTTTCTTGCTTTCGGGCAAAAACAAATGTGGTGAGGGGGN
TGGGNAAACCAAACCCCTTAAAATTAAGGNNAAAAAAGGGGTTTTATTCT
TTTCGGGNCCCGGGGGGNAAAAAAAATTTGTTTCCTTTTTTTGGGGGGAA
AAATCCAATTTGGGGGGNCCAAAAGAGGGGGGGGTTTTTAATATTTAAGG
GNNAAAGGGTTTTAAAAGGGNAAAAGGGGGGGGTTTTCCCCAAAGGGGGG
GCGCCCCCTTTTTTGTGGGGGGGCCCCCCCCCCCCCTTTAAAAAAATTTA
AAAATTTTCCCCCCCCCCACAAAAGAGGAGGGGCGCCCCCTTTTTTTTTT
TTTTNTNNTTTTTTTTCGCGGGGGGGGNCCCCCCCCCCCAAACCCCCCCC
CTTTTTTCCCTTCTGAGAGGCAAAATTAATGGGGGAAAAGGGGGNAACNC
ACCTTTTGTGCGCCCAAGAGGGGGGGGTCCCCCCTCTTTGGGGGGGTGGG
GGGAAAAAAAAAAAAAAAAGCNNCCCCCCCCCCGGGTGGTGGGGAAAAAA
ACATTATTTTTCTCCTGTGGCGGCCCCTTTAAGAGGNNCACAATATAAAT
ATGGTGGGAAAAGAGGGGGGGGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_h19.b1 MSMg01no373_h19.b1 CHROMAT_FILE:
MSMg01no373_h19.b1 PHD_FILE: MSMg01no373_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:27 2005
         (485 letters)



>mm_chr4_138973135_138974019
          Length = 885

 Score =  938 bits (485), Expect = 0.0
 Identities = 485/485 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacagagtgagttttaggacacccagggctatatacacagagaccttgtctatagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tctacagagtgagttttaggacacccagggctatatacacagagaccttgtctatagata 679

                                                                       
Query: 61  gataaataaaaaattttaaaagcatgtgagggagaataatcagaatgtattaaaaacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gataaataaaaaattttaaaagcatgtgagggagaataatcagaatgtattaaaaacatg 619

                                                                       
Query: 121 catgaaactggcagtgtacaaatttaattaattagaactagtgttataaattaagcatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 catgaaactggcagtgtacaaatttaattaattagaactagtgttataaattaagcatta 559

                                                                       
Query: 181 aacatataaacacagcaatttcagaactggacttgaaccactacagcacaagacatctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacatataaacacagcaatttcagaactggacttgaaccactacagcacaagacatctag 499

                                                                       
Query: 241 taaggtagcaagtgacaggccgagtcagctccgaagtttctccagggtaaatctcaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taaggtagcaagtgacaggccgagtcagctccgaagtttctccagggtaaatctcaagaa 439

                                                                       
Query: 301 gccacgctacagtgctagaatggggcggtgtgcaatgcccaaagggaaggctacagtgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gccacgctacagtgctagaatggggcggtgtgcaatgcccaaagggaaggctacagtgct 379

                                                                       
Query: 361 agaatggggcggtgtgcaatgcccaaagggaaggctacagtgctagaatggggcggtgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agaatggggcggtgtgcaatgcccaaagggaaggctacagtgctagaatggggcggtgtg 319

                                                                       
Query: 421 caatgcccaaagggcaggctacagtgctagaatgaggcggtgtgcaatgcccaaagggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caatgcccaaagggcaggctacagtgctagaatgaggcggtgtgcaatgcccaaagggaa 259

                
Query: 481 cgcta 485
           |||||
Sbjct: 258 cgcta 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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