BAC Information

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BAC

Clone NameMSMg01-373H21
Chromosome4 (Build37)
Map Location 126,554,878 - 126,555,377
singlet/doubletsinglet
Overlap genenone
Upstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320
Downstream geneSfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373H21.T7 (MSMg01no373_h21.b1)MSMg01-373H21.TJ (MSMg01no373_h21.g1)
ACCAG479510AG479511
length713723
length of high quality
(start - end)		510 (11 - 520)510 (57 - 566)
definitionCHROMAT_FILE: MSMg01no373_h21.b1 PHD_FILE: MSMg01no373_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:27 2005CHROMAT_FILE: MSMg01no373_h21.g1 PHD_FILE: MSMg01no373_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTTTCAGAGGATCCGCGGAATTCCAAGGCACTGGCATAAGATACTG
TCTGGGTCATACTTTTCACCATTTGGTCTCCGCACCTCTTGGATAAACTG
GCATAAGCCCAAACTCAACTCAGAAAAAGTGCAGGACAGAATATCTTCCT
TCAGTTTCACAGAGCGGGCTGTGGAAAGGGAGAAAACACATCTGAAACAT
TAACTTTAAAAAACAGCGTATAACTACTATTTACTGAATCAACACAAGTA
CCAGTGTGCCAACACTGTATTGGGTCACAAAGACACTGTAAATAGGAAAG
CACACCTGTAACCTGTGTTCTCAAGATGCTGAAGCAGGAGGATTCTGAGG
TCTAGGCTAGCCTGGGCTACAAAGAAAAACCCTGTGCCGAATTAAAAAAA
CCAATCAAAGAACAGATCCTGTTTTACCAGTAGACAAATAAAGATGGTTT
ACTGCATATGGTATAACAGGTACTATATATGGCACAAGTCTTGTTTAACT
AGGACTCTATGAAAGTAAACAAAAGAAGTTGGGCGCAATGGTGTGTGCTT
TTAATTCCAGCATGAGAGGAAGAAGCAGGCAGATCTCTTTTGGGTTAGAG
GTCAGACTTGTGAACCCAGGAAATTCTGGAAAGCCCGGGCTACATAANGA
AAAAAGAAAGTGAAAAAAGGCCAAAACGGACCGACCGACCGACCGACGGA
TTGAGAATCCGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTCTGA
GCCTTGTGGCTGACATCCGTTATCTCCTGTGTGGGATGCATGTCGGTCCG
GAGCTCTGTAATTAAACGACCTCATGTAATTACATCAAGATGGTCCTTCG
TGATTTTTTGGGTGCACGCCGAATCAGGAATTGAGTGTGGGTTTCCCCAC
TAGGTTCTATCAGGGCAAGATAAGACAAGAAACTAACTTTAGGCTGTGAT
AGGGAAGTAGGATAAGGCAGGAATTGTAATCTTAGGGTGGAACTAGTCCT
CAGACAAGATTTTTGGGCTTGGAGGAGGAAGTGGGCTCAAGTATTTCGGT
CATTAAGATAAGCCCTTTTTCAGAGGGAGGCAGAGGCAGGAGGATTTCTG
AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT
CTCTCTCTCTCTATATATATATATATCTTACAGCTGTTTTGTTCCTTATT
GAATCGCTTGCCCAAAATACTTGCATGTAATTAAAGTGGNATAAAAGGTG
GGTTGGAAAATAAAATTTGCCTACAGTCCTCAAAATGACTGGGGTTCACC
TTCAATGTTGTCTAAATGGCCTTTTTCCTTTTAAACCCCACCCCCCCAAG
GGAAAACCGGTGATCTGTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_h21.b1 MSMg01no373_h21.b1 CHROMAT_FILE:
MSMg01no373_h21.b1 PHD_FILE: MSMg01no373_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:27 2005
         (510 letters)



>mm_chr4_126554668_126555577
          Length = 910

 Score =  905 bits (468), Expect = 0.0
 Identities = 492/500 (98%), Gaps = 1/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattccaaggcactggcataagatactgtctgggtcatacttttcaccatttggtctcc 71
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattccaaggcacaggtataagatactgtctgggtcatacttttcaccatttggtctcc 270

                                                                       
Query: 72  gcacctcttggataaactggcataagcccaaactcaactcagaaaaagtgcaggacagaa 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gcacctcttggataaactggcataagcccaaactcaactcagaaaaagtgcaggacagaa 330

                                                                       
Query: 132 tatcttccttcagtttcacagagcgggctgtggaaagggagaaaacacatctgaaacatt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tatcttccttcagtttcacagagcgggctgtggaaagggagaaaacacatctgaaacatt 390

                                                                       
Query: 192 aactttaaaaaacagcgtataactactatttactgaatcaacacaagtaccagtgtgcc- 250
           ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| 
Sbjct: 391 aactttaaaaaacagtgtataactactatttactgaatcaacacaagcactagtgtgccc 450

                                                                       
Query: 251 aacactgtattgggtcacaaagacactgtaaataggaaagcacacctgtaacctgtgttc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aacactgtattgggtcacaaagacactgtaaataggaaagcacacctgtaacctgtgttc 510

                                                                       
Query: 311 tcaagatgctgaagcaggaggattctgaggtctaggctagcctgggctacaaagaaaaac 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcaagatgctgaagcaggaggattctgaggtctaggctagcctgggctacaaagaaaaac 570

                                                                       
Query: 371 cctgtgccgaattaaaaaaaccaatcaaagaacagatcctgttttaccagtagacaaata 430
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cttgtgccgaattaaaaaaaccaatcaaagaacagatcctgttttaccagtagacaaata 630

                                                                       
Query: 431 aagatggtttactgcatatggtataacaggtactatatatggcacaagtcttgtttaact 490
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 631 aagatggtttactgcatatggtataacaggtactatgtatggcacaagtcttgtttaact 690

                               
Query: 491 aggactctatgaaagtaaac 510
           ||||||||||||||||||||
Sbjct: 691 aggactctatgaaagtaaac 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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