BAC Information

Click to search

BAC

Clone NameMSMg01-373I22
Chromosome4 (Build37)
Map Location 50,464,234 - 50,464,389
singlet/doubletsinglet
Overlap genenone
Upstream geneBaat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373I22.T7 (MSMg01no373_i22.b1)MSMg01-373I22.TJ (MSMg01no373_i22.g1)
ACCAG479560AG479561
length728735
length of high quality
(start - end)		564 (19 - 582)214 (72 - 285)
definitionCHROMAT_FILE: MSMg01no373_i22.b1 PHD_FILE: MSMg01no373_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:32 2005CHROMAT_FILE: MSMg01no373_i22.g1 PHD_FILE: MSMg01no373_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATAGTTCAGAGGATCCGCGGAATTCAATTACATTATACACACAC
ACACACACACACACACACACACACACACACACACACACACACAAGATTAG
GAAACCTCTACTTAAGAATCAGCTATACCACAACTCTTGGGAATCTACCC
AGATTCTGCATATTATTGCAGAGACACTTGCTCAACCATGCCTATTATTC
CTCTATCATAATAGTGAAAAATTGGAAATACAGCCTTGATGTCTGTCAAT
GGAAGAAAGGATAGAAAAAATATTGTACATGTACACAATTGAATATCACC
CACACATCAAAAAGCCAAAATAATAAGATTTGAAGGCAAATGTACAGAGC
TAAAAAAAAAACAAACAAAACAAAACAAAACAAAAAAACAAAAGAAAGAA
AGAAAGAAACATAAAACTCACCTCATTCTGAGAGAGGAAACTCACACCCA
GAAAGACAGTTATGGTATACATTTTCTTGTATGTGCATGTTAGCTGTAAG
TATTTGATACTTAAGCTATTATATGGACAACCATGAAGGCTATGTAACCT
AAGTAAGGAAGAACATGAAGGATTGGATCTCCATAGGTATATGTGGTGGT
GTAAATATGCTTGAGCCATGGAAAGTGGCACTATTAGTANGAATGGACCT
TTTTTTTTTTTTTTGAAAAAGACATGACTGTGTGGGTGGGCTTTGAAACT
CCTCCACTGCAGAAATGTCCGCCCTCCN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTAGTAACAGGAGAAACAGAAGACAAT
CATTGCTGATAAAGGAGGATGGTGAACATTCTATGAAATTAATTCTAGGA
ATGACATTTACAAAATTAAGATTTAAGGTGGGAGAAAATGAAAACACTGG
CTTGAGGAATAGAGAGGGGTGTGCATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATACATATATCTATAAAGCT
GGAGAGAGAGCGCGCGACTACTTTTTCTATTTGCATGGTCCGCGAGCGTG
CCTGTGTTTGAGATATCCTGATTTTAATTGAGAGTGTCTCCTCCACTAAG
CAAAATTTTCTGTAGAAACGGAACTGGGGAGAAACGAAACATATACAGAT
ATATATACAGAGATAGATATACACACACGAGCGACCGGGAGTGGGGATCA
AAAAGTGGTGGGATAAGATGGGAAAGACATATATAAATATATATGTNCAC
TATNTTTCANCCAGCNCATATAATTATGTTTGACACTTTCACACCATTAA
AAAACACTTACTGGTCTATAGAACGTCAGAACATGAAATGTCTCAGGCTC
TTAAAAACCTTATTTTGTCCGGGTTTGGAAGAAACACATACTCTGAAGGG
TTTGTGTTGCTCCGCCTCTGGGGGCCCGGTCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_i22.g1 MSMg01no373_i22.g1 CHROMAT_FILE:
MSMg01no373_i22.g1 PHD_FILE: MSMg01no373_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:32 2005
         (214 letters)



>mm_chr4_50464041_50464651
          Length = 611

 Score =  277 bits (143), Expect = 4e-79
 Identities = 154/159 (96%), Gaps = 3/159 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   agtaacaggagaaacagaagacaatcattgctgataaaggaggatggtgaacattctatg 64
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 349 agtaacaggagaaacagaagacaatcattgctgataa---aggatggtgaacattctatg 293

                                                                       
Query: 65  aaattaattctaggaatgacatttacaaaattaagatttaaggtgggagaaaatgaaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaattaattctaggaatgacatttacaaaattaagatttaaggtgggagaaaatgaaaac 233

                                                  
Query: 125 actggcttgaggaatagagaggggtgtgcatatatatat 163
           |||||||||||||||||||||||||||| | ||||||||
Sbjct: 232 actggcttgaggaatagagaggggtgtggagatatatat 194


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 611
Length adjustment: 9
Effective length of query: 205
Effective length of database: 602
Effective search space:   123410
Effective search space used:   123410
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |